Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   NYR52_RS08850 Genome accession   NZ_CP103866
Coordinates   1771804..1772184 (-) Length   126 a.a.
NCBI ID   WP_281275214.1    Uniprot ID   -
Organism   Laceyella sacchari strain FBKL4.014     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1766804..1777184
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NYR52_RS08825 (NYR52_08825) - 1766882..1767739 (-) 858 WP_022738183.1 cytochrome c oxidase assembly protein -
  NYR52_RS16760 (NYR52_08835) - 1769251..1769449 (-) 199 Protein_1705 serine hydrolase domain-containing protein -
  NYR52_RS08840 (NYR52_08840) - 1769646..1770092 (+) 447 WP_259435475.1 hypothetical protein -
  NYR52_RS08845 (NYR52_08845) - 1770222..1771571 (+) 1350 Protein_1707 IS1182 family transposase -
  NYR52_RS08850 (NYR52_08850) nucA/comI 1771804..1772184 (-) 381 WP_281275214.1 NucA/NucB deoxyribonuclease domain-containing protein Machinery gene
  NYR52_RS08855 (NYR52_08855) - 1772894..1773307 (-) 414 WP_259435476.1 LysR family transcriptional regulator substrate-binding protein -
  NYR52_RS08860 (NYR52_08860) - 1773311..1773658 (-) 348 WP_259435477.1 LysR family transcriptional regulator -
  NYR52_RS08865 (NYR52_08865) - 1773967..1774394 (+) 428 Protein_1711 MFS transporter -
  NYR52_RS08870 (NYR52_08870) - 1775098..1776000 (-) 903 WP_259435478.1 Nif3-like dinuclear metal center hexameric protein -
  NYR52_RS08875 (NYR52_08875) - 1776308..1776835 (+) 528 WP_132220588.1 NAD(P)H-dependent oxidoreductase -

Sequence

Protein


Download         Length: 126 a.a.        Molecular weight: 13793.50 Da        Isoelectric Point: 4.6555

>NTDB_id=726262 NYR52_RS08850 WP_281275214.1 1771804..1772184(-) (nucA/comI) [Laceyella sacchari strain FBKL4.014]
MVVCSFIITSAVPVMAATSYDVVLYFPFSRYPETGDHIRDAIAAGHSSICTIDRDGADERRKESLAPYPPKSGYDRDEWP
MAMCLEGGAGADVRYISPSDNRGAGAWVGNQLEPYPDGTRVKFIVQ

Nucleotide


Download         Length: 381 bp        

>NTDB_id=726262 NYR52_RS08850 WP_281275214.1 1771804..1772184(-) (nucA/comI) [Laceyella sacchari strain FBKL4.014]
ATGGTTGTTTGTTCTTTTATTATCACATCGGCAGTACCTGTTATGGCTGCCACTTCCTATGATGTAGTCTTGTACTTTCC
TTTCAGTCGATACCCTGAAACAGGAGATCACATTCGTGATGCGATTGCCGCAGGACATTCTTCTATCTGTACCATTGATC
GTGATGGAGCGGATGAAAGAAGAAAAGAATCTTTAGCTCCATATCCTCCAAAGAGTGGATATGATCGCGATGAATGGCCA
ATGGCCATGTGTCTTGAGGGCGGTGCTGGAGCTGATGTGCGCTACATTTCCCCTTCGGATAACCGTGGCGCTGGTGCATG
GGTAGGAAATCAATTGGAGCCGTATCCAGACGGAACACGTGTAAAGTTTATCGTTCAGTAA

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(30-121)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

67.29

84.921

0.571