Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   NYR52_RS03670 Genome accession   NZ_CP103866
Coordinates   704037..704990 (+) Length   317 a.a.
NCBI ID   WP_259436307.1    Uniprot ID   -
Organism   Laceyella sacchari strain FBKL4.014     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 699037..709990
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NYR52_RS03650 (NYR52_03650) trmB 700050..700691 (-) 642 WP_259436304.1 tRNA (guanosine(46)-N7)-methyltransferase TrmB -
  NYR52_RS03655 (NYR52_03655) - 701110..701910 (-) 801 WP_259436305.1 hypothetical protein -
  NYR52_RS03660 (NYR52_03660) - 702228..703295 (+) 1068 WP_259436306.1 hypothetical protein -
  NYR52_RS03665 (NYR52_03665) - 703491..703642 (+) 152 Protein_670 hypothetical protein -
  NYR52_RS03670 (NYR52_03670) ceuB 704037..704990 (+) 954 WP_259436307.1 ABC transporter permease Machinery gene
  NYR52_RS03675 (NYR52_03675) - 704980..705930 (+) 951 WP_132219708.1 iron chelate uptake ABC transporter family permease subunit -
  NYR52_RS03680 (NYR52_03680) - 705924..706682 (+) 759 WP_132219709.1 ABC transporter ATP-binding protein -
  NYR52_RS03685 (NYR52_03685) - 706695..707639 (+) 945 WP_158283174.1 siderophore ABC transporter substrate-binding protein -
  NYR52_RS03690 (NYR52_03690) - 707867..708409 (+) 543 WP_259436308.1 RNA polymerase sigma factor SigX -
  NYR52_RS03695 (NYR52_03695) - 708406..709581 (+) 1176 WP_259436309.1 anti-sigma factor -

Sequence

Protein


Download         Length: 317 a.a.        Molecular weight: 34809.92 Da        Isoelectric Point: 9.7685

>NTDB_id=726252 NYR52_RS03670 WP_259436307.1 704037..704990(+) (ceuB) [Laceyella sacchari strain FBKL4.014]
MKKRYLIAALIVLSFCSVFIGVKDVNPLDLFRLDEEATQILLISRLPRLASIIIAGVSMSIAGLIMQQLSRNKFVSPTTA
GTMDAARMGILVSMMLFASASPLQKMLVAFGFALVGTWVFMKILERIKFKDTIFIPLVGLMFGNIVSSVTTFFAYKYDLI
QNISSWLQGDFSLVIKGQYELIYVSVPLVVIAYAFANIFTVAGMGEEFSINLGLNYKQIVNIGLIIVALVTSVVVLTAGM
IPFLGLIIPNIVSIYQGDHLKKNLSHTALLGAVFVLFCDILGRVIIYPYEISIGLTVGVIGSAIFLYLLMRSKKYAS

Nucleotide


Download         Length: 954 bp        

>NTDB_id=726252 NYR52_RS03670 WP_259436307.1 704037..704990(+) (ceuB) [Laceyella sacchari strain FBKL4.014]
ATGAAAAAAAGATATTTGATCGCAGCGTTGATTGTGTTGTCGTTCTGCTCCGTATTCATCGGCGTCAAAGATGTAAATCC
GTTGGATCTGTTCCGCTTAGACGAAGAGGCAACGCAAATATTGCTGATCAGCCGGTTGCCGCGTTTGGCCAGTATCATCA
TTGCTGGGGTGAGCATGAGCATCGCCGGTTTGATCATGCAACAATTAAGCAGAAACAAATTTGTGTCGCCGACGACTGCT
GGAACGATGGATGCCGCAAGGATGGGGATTTTGGTGTCTATGATGCTGTTCGCCTCAGCCAGCCCTTTGCAAAAAATGTT
GGTGGCCTTTGGATTCGCCTTGGTTGGAACATGGGTGTTCATGAAAATACTGGAGAGAATCAAATTTAAAGACACCATCT
TTATTCCGCTTGTAGGCTTGATGTTTGGGAATATCGTCAGTTCCGTCACCACGTTTTTCGCGTATAAGTATGATTTGATC
CAGAACATCTCTTCATGGCTACAAGGAGATTTTTCGTTGGTCATCAAAGGGCAGTACGAGCTGATCTATGTGAGTGTCCC
GCTGGTGGTGATCGCCTATGCCTTTGCAAACATTTTTACTGTGGCCGGCATGGGGGAGGAATTTTCCATCAATCTGGGGT
TGAACTACAAACAGATCGTAAACATCGGCTTGATCATCGTCGCCCTCGTTACTAGTGTGGTTGTGCTTACTGCGGGCATG
ATTCCTTTTTTAGGGCTGATCATCCCCAATATCGTCAGCATCTACCAAGGAGACCATCTGAAAAAAAACCTTTCCCACAC
CGCTTTGCTGGGTGCCGTGTTTGTGCTGTTTTGCGATATTCTGGGCCGGGTCATCATTTACCCGTATGAAATCTCCATCG
GTCTGACCGTCGGGGTGATTGGTAGCGCAATTTTCCTTTATTTACTGATGAGGAGCAAGAAATATGCATCATAA

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(10-311)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

51.438

98.738

0.508