Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   NYR52_RS01050 Genome accession   NZ_CP103866
Coordinates   218551..219924 (+) Length   457 a.a.
NCBI ID   WP_132223205.1    Uniprot ID   -
Organism   Laceyella sacchari strain FBKL4.014     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 213551..224924
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NYR52_RS01030 (NYR52_01030) - 213602..214072 (+) 471 WP_022738820.1 CtsR family transcriptional regulator -
  NYR52_RS01035 (NYR52_01035) - 214079..214588 (+) 510 WP_259436142.1 UvrB/UvrC motif-containing protein -
  NYR52_RS01040 (NYR52_01040) - 214600..215679 (+) 1080 WP_259436143.1 protein arginine kinase -
  NYR52_RS01045 (NYR52_01045) - 215872..218319 (+) 2448 WP_022738824.1 ATP-dependent Clp protease ATP-binding subunit -
  NYR52_RS01050 (NYR52_01050) radA 218551..219924 (+) 1374 WP_132223205.1 DNA repair protein RadA Machinery gene
  NYR52_RS01055 (NYR52_01055) disA 219928..221001 (+) 1074 WP_132223208.1 DNA integrity scanning diadenylate cyclase DisA -
  NYR52_RS01060 (NYR52_01060) pssA 221098..221805 (+) 708 WP_022738828.1 CDP-diacylglycerol--serine O-phosphatidyltransferase -
  NYR52_RS01065 (NYR52_01065) - 221910..222305 (-) 396 WP_132223211.1 DUF1573 domain-containing protein -
  NYR52_RS01070 (NYR52_01070) - 222532..223026 (+) 495 WP_259436708.1 CarD family transcriptional regulator -
  NYR52_RS01075 (NYR52_01075) - 223151..224245 (+) 1095 WP_102991313.1 PIN/TRAM domain-containing protein -

Sequence

Protein


Download         Length: 457 a.a.        Molecular weight: 49449.07 Da        Isoelectric Point: 6.8251

>NTDB_id=726248 NYR52_RS01050 WP_132223205.1 218551..219924(+) (radA) [Laceyella sacchari strain FBKL4.014]
MAKKKTKFVCQECGYESAKWMGRCPGCGTWNAMVEEMDSKAAIIPGTGLKIRDKHEKATPITQVEKLDQPRSDTGIKELN
RVLGGGLVPGSFILVGGDPGIGKSTLLLQASHELAKRGLPILYVSGEESTEQIRIRADRLGALSENLLVASETNLTAIES
LMDENNPKLMVVDSIQTVFHPEVMSAPGSVAQVRECTGTLMRWAKDRGMAIIIVGHVTKAGAIAGPRMLEHMVDCVLYFE
GERHHTYRVLRAVKNRFGSTNEIGVFEMKESGLAEVDNPSEMFLSGRPVGAPGTAVAASIEGTRPVLIELQALVAPTSFA
TPKRMATGVDHNRVTMIMAVLEKRLGFFLQNQDAYINVVGGVRLDEPAVDLAMAISLASSFRDVSTSAHDLFIGEVGLTG
EVRGVSRIEQRVAEAANMGFRRVVIPEKNRRGWTPPEGVELIGVHTLEEALRVALGG

Nucleotide


Download         Length: 1374 bp        

>NTDB_id=726248 NYR52_RS01050 WP_132223205.1 218551..219924(+) (radA) [Laceyella sacchari strain FBKL4.014]
GTGGCGAAAAAAAAGACCAAGTTTGTGTGCCAGGAATGCGGATATGAATCGGCCAAATGGATGGGGCGTTGCCCAGGATG
CGGAACCTGGAATGCCATGGTGGAAGAGATGGATAGCAAAGCGGCCATCATTCCGGGCACGGGGTTGAAAATCCGTGACA
AACATGAAAAAGCGACGCCGATTACGCAAGTGGAGAAGCTGGATCAGCCGCGTTCCGACACGGGCATCAAGGAATTGAAC
CGCGTTTTGGGCGGAGGCTTGGTGCCGGGTTCTTTTATTTTGGTCGGAGGTGACCCGGGAATCGGGAAATCGACGCTGCT
TCTGCAAGCGTCACATGAATTAGCCAAGCGCGGGTTGCCCATCTTATATGTATCGGGAGAAGAATCGACGGAGCAGATCC
GCATTCGTGCCGATCGGCTTGGAGCGTTGAGCGAGAACTTATTGGTGGCTTCCGAAACCAATTTGACTGCGATCGAAAGC
CTGATGGATGAAAATAACCCAAAATTAATGGTGGTTGACTCCATTCAAACGGTGTTTCATCCGGAAGTGATGTCTGCACC
AGGGAGCGTTGCCCAAGTGCGGGAATGCACCGGCACGCTGATGCGTTGGGCCAAGGACAGAGGCATGGCGATCATCATCG
TGGGTCATGTGACCAAAGCGGGGGCGATCGCTGGGCCGAGGATGTTGGAGCACATGGTGGATTGCGTTTTGTATTTTGAA
GGGGAGCGCCACCATACGTACCGGGTGCTCAGAGCAGTCAAAAACCGGTTTGGATCGACCAATGAAATCGGCGTATTTGA
AATGAAGGAAAGCGGATTGGCAGAAGTGGATAATCCTTCAGAGATGTTTTTGTCGGGAAGGCCCGTGGGCGCTCCTGGTA
CCGCTGTGGCCGCAAGTATCGAGGGAACGCGGCCGGTTTTGATTGAGTTACAGGCCTTGGTCGCACCTACAAGTTTTGCT
ACGCCTAAACGAATGGCAACCGGGGTTGATCACAACCGCGTCACCATGATTATGGCGGTGTTGGAGAAACGGCTCGGCTT
TTTCCTGCAAAATCAGGATGCCTATATCAATGTGGTCGGCGGAGTACGGTTGGATGAACCAGCTGTCGATTTGGCCATGG
CCATCAGCTTGGCGTCAAGCTTTCGCGATGTTTCTACATCCGCGCACGATTTGTTCATCGGCGAGGTAGGGCTGACAGGG
GAAGTGCGTGGCGTTTCGCGCATTGAACAGCGGGTGGCGGAAGCGGCAAATATGGGATTTCGGCGTGTCGTCATTCCGGA
GAAGAACCGGCGGGGTTGGACGCCGCCGGAAGGGGTGGAACTGATAGGGGTGCATACATTAGAAGAAGCATTGCGTGTGG
CGTTGGGGGGGTAA

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

Subunit ChlI of Mg-chelatase (ChlI)

(343-429)

KaiC (ATPase)

(73-270)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

62.664

100

0.628
  radA Streptococcus mitis NCTC 12261

54.945

99.562

0.547
  radA Streptococcus mitis SK321

54.945

99.562

0.547
  radA Streptococcus pneumoniae Rx1

54.725

99.562

0.545
  radA Streptococcus pneumoniae D39

54.725

99.562

0.545
  radA Streptococcus pneumoniae R6

54.725

99.562

0.545
  radA Streptococcus pneumoniae TIGR4

54.725

99.562

0.545