Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   PX810_RS14205 Genome accession   NZ_CP119402
Coordinates   2895012..2895641 (-) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   Q32HU7
Organism   Escherichia coli strain MRE162 substr. FRA     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 2890012..2900641
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PX810_RS14190 (PX810_002838) helD 2890254..2892308 (-) 2055 WP_001295354.1 DNA helicase IV -
  PX810_RS14195 (PX810_002839) yccF 2892431..2892877 (+) 447 WP_001261235.1 YccF domain-containing protein -
  PX810_RS14200 (PX810_002840) yccS 2892887..2895049 (+) 2163 WP_000875061.1 YccS family putative transporter -
  PX810_RS14205 (PX810_002841) sxy/tfoX 2895012..2895641 (-) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  PX810_RS14210 (PX810_002842) sulA 2895860..2896369 (+) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  PX810_RS14215 (PX810_002843) ompA 2896726..2897766 (+) 1041 WP_000750416.1 porin OmpA -
  PX810_RS14220 (PX810_002844) matP 2897842..2898294 (-) 453 WP_000877161.1 macrodomain Ter protein MatP -
  PX810_RS14225 (PX810_002845) ycbZ 2898480..2900240 (+) 1761 WP_000156518.1 Lon protease family protein -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=726216 PX810_RS14205 WP_000839153.1 2895012..2895641(-) (sxy/tfoX) [Escherichia coli strain MRE162 substr. FRA]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=726216 PX810_RS14205 WP_000839153.1 2895012..2895641(-) (sxy/tfoX) [Escherichia coli strain MRE162 substr. FRA]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterProScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q32HU7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1