Detailed information NTG0726191

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: PX810_RS04935
• Genome accession: NZ_CP119402
• Coordinates: 1020394..1021386 (+)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain MRE162 substr. FRA
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1015394..1026386

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
PX810_RS04905 (PX810_000981)	ispD	1015455..1016165 (+)	711	WP_000246135.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
PX810_RS04910 (PX810_000982)	ispF	1016165..1016644 (+)	480	WP_001219242.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
PX810_RS04915 (PX810_000983)	truD	1016641..1017690 (+)	1050	WP_000568946.1	tRNA pseudouridine(13) synthase TruD	-
PX810_RS04920 (PX810_000984)	surE	1017671..1018432 (+)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
PX810_RS04925 (PX810_000985)	pcm	1018426..1019052 (+)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
PX810_RS04930 (PX810_000986)	nlpD	1019237..1020331 (+)	1095	WP_224692580.1	murein hydrolase activator NlpD	-
PX810_RS04935 (PX810_000987)	rpoS	1020394..1021386 (+)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
PX810_RS04940 (PX810_000988)	ygbN	1021480..1022844 (-)	1365	WP_000104441.1	GntP family transporter	-
PX810_RS04945 (PX810_000989)	ygbM	1022933..1023709 (-)	777	WP_001136934.1	HPr family phosphocarrier protein	-
PX810_RS04950 (PX810_000990)	ygbL	1023714..1024352 (-)	639	WP_001278994.1	aldolase	-
PX810_RS04955 (PX810_000991)	otnK	1024349..1025611 (-)	1263	WP_000590403.1	3-oxo-tetronate kinase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=726191 PX810_RS04935 WP_000081550.1 1020394..1021386(+) (rpoS) [Escherichia coli strain MRE162 substr. FRA]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=726191 PX810_RS04935 WP_000081550.1 1020394..1021386(+) (rpoS) [Escherichia coli strain MRE162 substr. FRA]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTTATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATTGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCATGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGTGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715