Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   PX809_RS19570 Genome accession   NZ_CP119400
Coordinates   4014398..4014874 (-) Length   158 a.a.
NCBI ID   WP_001560293.1    Uniprot ID   -
Organism   Escherichia coli strain MRE162 substr. NOR     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4009398..4019874
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PX809_RS19525 (PX809_003905) nanS 4009596..4010576 (+) 981 WP_001295601.1 sialate O-acetylesterase -
  PX809_RS19530 (PX809_003906) - 4010584..4011234 (-) 651 WP_001037966.1 HNH endonuclease -
  PX809_RS19535 (PX809_003907) - 4011371..4011514 (+) 144 Protein_3820 restriction endonuclease -
  PX809_RS23250 - 4012178..4012312 (-) 135 Protein_3821 transcriptional regulator -
  PX809_RS19540 (PX809_003908) - 4012282..4012425 (-) 144 Protein_3822 hypothetical protein -
  PX809_RS19545 (PX809_003909) - 4012510..4012707 (-) 198 WP_001327226.1 DUF957 domain-containing protein -
  PX809_RS19550 (PX809_003910) - 4012727..4013215 (-) 489 WP_000777664.1 DUF5983 family protein -
  PX809_RS19555 (PX809_003911) - 4013212..4013589 (-) 378 WP_000854919.1 TA system toxin CbtA family protein -
  PX809_RS19560 (PX809_003912) cbeA 4013636..4014010 (-) 375 WP_001285608.1 type IV toxin-antitoxin system cytoskeleton bundling-enhancing antitoxin CbeA -
  PX809_RS19565 (PX809_003913) - 4014090..4014311 (-) 222 WP_000692350.1 DUF987 domain-containing protein -
  PX809_RS19570 (PX809_003914) radC 4014398..4014874 (-) 477 WP_001560293.1 RadC family protein Machinery gene
  PX809_RS19575 (PX809_003915) - 4014889..4015368 (-) 480 WP_000706978.1 antirestriction protein -
  PX809_RS19580 (PX809_003916) - 4015634..4016452 (-) 819 WP_001175165.1 DUF932 domain-containing protein -
  PX809_RS19585 (PX809_003917) - 4016542..4016775 (-) 234 WP_001278293.1 DUF905 family protein -
  PX809_RS19590 (PX809_003918) - 4016781..4017458 (-) 678 WP_001097302.1 hypothetical protein -
  PX809_RS19595 (PX809_003919) - 4017606..4018286 (-) 681 WP_001282921.1 WYL domain-containing protein -
  PX809_RS19600 (PX809_003920) - 4018489..4019373 (-) 885 WP_000010383.1 GTPase -

Sequence

Protein


Download         Length: 158 a.a.        Molecular weight: 17656.25 Da        Isoelectric Point: 6.9859

>NTDB_id=726152 PX809_RS19570 WP_001560293.1 4014398..4014874(-) (radC) [Escherichia coli strain MRE162 substr. NOR]
MQQISFLPGEMTPGERSLIQRALKTLDRHLHEPGVAFTSTHAAREWLILNMAGLEREEFRVLYLNNQNQLIAGETLFTGT
INRTEVHPREVIKRALYHNAAAVVLAHNHPSGEVTPSKADRLITERLVQALALVDIRVPDHLIVGGSQVFSFAEHGLL

Nucleotide


Download         Length: 477 bp        

>NTDB_id=726152 PX809_RS19570 WP_001560293.1 4014398..4014874(-) (radC) [Escherichia coli strain MRE162 substr. NOR]
ATGCAACAGATTTCCTTTCTGCCCGGAGAAATGACGCCCGGTGAGCGCAGCCTCATTCAGCGGGCCCTGAAAACCCTGGA
CCGCCATCTTCATGAACCCGGTGTGGCCTTCACCTCCACGCATGCGGCACGGGAATGGCTGATACTGAACATGGCGGGAC
TGGAGCGGGAAGAGTTCCGGGTGCTGTATCTGAACAACCAGAATCAGCTGATTGCCGGTGAAACCCTCTTCACCGGTACC
ATCAACCGCACGGAAGTCCATCCCCGGGAAGTGATTAAACGCGCCCTGTACCACAATGCCGCTGCCGTGGTGCTGGCACA
CAATCACCCGTCCGGTGAAGTCACACCCAGCAAGGCAGACCGCCTTATCACGGAACGTCTGGTACAGGCACTGGCCCTGG
TGGATATCCGGGTGCCGGACCATCTGATAGTCGGTGGCAGCCAGGTTTTCTCCTTTGCGGAACACGGTCTGCTTTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(38-157)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

59.615

65.823

0.392