Detailed information    

insolico Bioinformatically predicted

Overview

Name   agrA   Type   Regulator
Locus tag   NYR13_RS04415 Genome accession   NZ_CP103860
Coordinates   892904..893620 (-) Length   238 a.a.
NCBI ID   WP_000688492.1    Uniprot ID   A0A7U7IEW1
Organism   Staphylococcus aureus strain R3-8     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 887904..898620
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NYR13_RS04395 (NYR13_04395) - 888998..889948 (+) 951 WP_000790330.1 LacI family DNA-binding transcriptional regulator -
  NYR13_RS04400 (NYR13_04400) - 890097..891581 (+) 1485 WP_000141414.1 sucrose-6-phosphate hydrolase -
  NYR13_RS04405 (NYR13_04405) - 891578..892537 (+) 960 WP_001253312.1 carbohydrate kinase -
  NYR13_RS04410 (NYR13_04410) - 892725..892832 (-) 108 WP_001790167.1 hypothetical protein -
  NYR13_RS04415 (NYR13_04415) agrA 892904..893620 (-) 717 WP_000688492.1 quorum-sensing response regulator AgrA Regulator
  NYR13_RS04420 (NYR13_04420) agrC 893639..894931 (-) 1293 WP_001549202.1 quorum-sensing sensor histidine kinase AgrC -
  NYR13_RS04425 (NYR13_04425) agrD 894956..895096 (-) 141 WP_001093929.1 cyclic lactone autoinducer peptide AgrD -
  NYR13_RS04430 (NYR13_04430) agrB 895093..895662 (-) 570 WP_001105707.1 accessory gene regulator AgrB -
  NYR13_RS04435 (NYR13_04435) hld 895951..896031 (+) 81 WP_000046022.1 delta-hemolysin -
  NYR13_RS04440 (NYR13_04440) - 896628..897413 (-) 786 WP_000867960.1 carbon-nitrogen family hydrolase -
  NYR13_RS04445 (NYR13_04445) - 897774..898400 (-) 627 WP_000522384.1 nitroreductase family protein -

Sequence

Protein


Download         Length: 238 a.a.        Molecular weight: 27905.90 Da        Isoelectric Point: 6.0927

>NTDB_id=726151 NYR13_RS04415 WP_000688492.1 892904..893620(-) (agrA) [Staphylococcus aureus strain R3-8]
MKIFICEDDPKQRENMVTIIKNYIMIEEKPMEIALATDNPYEVLEQAKNMNDIGCYFLDIQLSTDINGIKLGSEIRKHDP
VGNIIFVTSHSELTYLTFVYKVAAMDFIFKDDPAELRTRIIDCLETAHTRLQLLSKDNSVETIELKRGSNSVYVQYDDIM
FFESSTKSHRLIAHLDNRQIEFYGNLKELSQLDDRFFRCHNSFVVNRHNIESIDSKERIVYFKNKEHCYASVRNVKKI

Nucleotide


Download         Length: 717 bp        

>NTDB_id=726151 NYR13_RS04415 WP_000688492.1 892904..893620(-) (agrA) [Staphylococcus aureus strain R3-8]
ATGAAAATTTTCATTTGCGAAGACGATCCAAAACAAAGAGAAAACATGGTTACCATTATTAAAAATTATATAATGATAGA
AGAAAAGCCTATGGAAATTGCCCTCGCAACTGATAATCCTTATGAGGTGCTTGAGCAAGCTAAAAATATGAATGACATAG
GCTGTTACTTTTTAGATATTCAACTTTCAACTGATATTAATGGTATCAAATTAGGCAGTGAAATTCGTAAGCATGACCCA
GTTGGTAACATTATTTTCGTTACGAGTCACAGTGAACTTACCTATTTAACATTTGTCTACAAAGTTGCAGCGATGGATTT
TATTTTTAAAGATGATCCAGCTGAATTAAGAACTCGAATTATAGACTGTTTAGAAACTGCACATACACGCTTACAATTGT
TGTCTAAAGATAATAGCGTTGAAACGATTGAATTAAAACGTGGCAGTAATTCAGTGTATGTTCAATATGATGATATTATG
TTTTTTGAATCATCAACAAAATCTCACAGACTCATTGCCCATTTAGATAACCGTCAAATTGAATTTTATGGTAATTTAAA
AGAACTGAGTCAATTAGATGATCGTTTCTTTAGATGTCATAATAGCTTTGTCGTCAATCGCCATAATATTGAATCTATAG
ATTCGAAAGAGCGAATTGTCTATTTTAAAAATAAAGAACACTGCTATGCATCGGTGAGAAACGTTAAAAAAATATAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(3-120)

LytTr DNA-binding domain (LytTR)

(151-237)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7U7IEW1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  agrA Staphylococcus aureus N315

100

100

1