Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   PX809_RS16700 Genome accession   NZ_CP119400
Coordinates   3426108..3426713 (-) Length   201 a.a.
NCBI ID   WP_001195025.1    Uniprot ID   P0A7H7
Organism   Escherichia coli strain MRE162 substr. NOR     
Function   promote later steps in plasmid transformation (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3421108..3431713
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PX809_RS16680 (PX809_003336) aes 3421145..3422104 (+) 960 WP_275770957.1 acetyl esterase -
  PX809_RS16685 (PX809_003337) hemH 3422101..3423063 (-) 963 WP_001250088.1 ferrochelatase -
  PX809_RS16690 (PX809_003338) adk 3423299..3423943 (-) 645 WP_001220233.1 adenylate kinase -
  PX809_RS16695 (PX809_003339) htpG 3424124..3425998 (-) 1875 WP_000678201.1 molecular chaperone HtpG -
  PX809_RS16700 (PX809_003340) recR 3426108..3426713 (-) 606 WP_001195025.1 recombination mediator RecR Machinery gene
  PX809_RS16705 (PX809_003341) ybaB 3426713..3427042 (-) 330 WP_000467098.1 YbaB/EbfC family nucleoid-associated protein -
  PX809_RS16710 (PX809_003342) dnaX 3427095..3429026 (-) 1932 WP_000122013.1 DNA polymerase III subunit gamma/tau -
  PX809_RS16715 (PX809_003343) apt 3429155..3429706 (-) 552 WP_000127356.1 adenine phosphoribosyltransferase -
  PX809_RS16720 (PX809_003344) ybaN 3429859..3430236 (-) 378 WP_001188905.1 DUF454 family protein -
  PX809_RS16725 (PX809_003345) priC 3430306..3430833 (+) 528 WP_000844874.1 primosomal replication protein N'' -
  PX809_RS16730 (PX809_003346) rsmS 3430847..3431008 (+) 162 WP_000051153.1 pleiotropic regulatory protein RsmS -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 21963.00 Da        Isoelectric Point: 4.9097

>NTDB_id=726142 PX809_RS16700 WP_001195025.1 3426108..3426713(-) (recR) [Escherichia coli strain MRE162 substr. NOR]
MQTSPLLTQLMEALRCLPGVGPKSAQRMAFTLLQRDRSGGMRLAQALTRAMSEIGHCADCRTFTEQEVCNICSNPRRQEN
GQICVVESPADIYAIEQTGQFSGRYFVLMGHLSPLDGIGPDDIGLDRLEQRLAEEKITEVILATNPTVEGEATANYIAEL
CAQYDVEASRIAHGVPVGGELEMVDGTTLSHSLAGRHKIRF

Nucleotide


Download         Length: 606 bp        

>NTDB_id=726142 PX809_RS16700 WP_001195025.1 3426108..3426713(-) (recR) [Escherichia coli strain MRE162 substr. NOR]
ATGCAAACCAGCCCGCTGTTAACACAGCTTATGGAAGCACTGCGCTGTCTGCCGGGCGTTGGCCCGAAGTCGGCGCAGCG
TATGGCGTTCACGCTGCTTCAGCGCGATCGTAGCGGCGGGATGCGTCTGGCGCAGGCGCTCACCCGGGCGATGTCGGAAA
TCGGCCACTGCGCCGATTGCCGCACTTTCACCGAACAGGAAGTCTGTAACATCTGTTCGAATCCGCGTCGTCAGGAAAAC
GGTCAAATCTGTGTGGTGGAGAGTCCGGCGGACATCTACGCCATTGAGCAGACGGGGCAGTTTTCAGGCCGTTATTTTGT
GTTGATGGGGCACCTGTCACCGCTGGACGGCATCGGTCCGGATGATATCGGCCTTGATCGTCTGGAACAGCGTCTGGCAG
AGGAAAAAATCACTGAAGTGATCCTCGCCACCAATCCCACGGTTGAAGGTGAAGCTACCGCTAACTACATTGCCGAGCTT
TGCGCGCAATATGACGTGGAAGCCAGCCGAATCGCTCATGGCGTACCGGTTGGCGGCGAACTGGAAATGGTCGATGGCAC
CACGCTGTCACACTCCCTTGCCGGGCGTCATAAGATTCGTTTTTAA

Domains

Predicted by InterProScan.

RecR protein (RecR_ZnF)

(41-77)

Toprim domain (Toprim_4)

(81-172)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0A7H7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

45.226

99.005

0.448
  recR Bacillus subtilis subsp. subtilis str. 168

44.724

99.005

0.443