Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   PX809_RS14215 Genome accession   NZ_CP119400
Coordinates   2899906..2900535 (-) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   Q32HU7
Organism   Escherichia coli strain MRE162 substr. NOR     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 2894906..2905535
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PX809_RS14200 (PX809_002840) helD 2895148..2897202 (-) 2055 WP_001295354.1 DNA helicase IV -
  PX809_RS14205 (PX809_002841) yccF 2897325..2897771 (+) 447 WP_001261235.1 YccF domain-containing protein -
  PX809_RS14210 (PX809_002842) yccS 2897781..2899943 (+) 2163 WP_000875061.1 YccS family putative transporter -
  PX809_RS14215 (PX809_002843) sxy/tfoX 2899906..2900535 (-) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  PX809_RS14220 (PX809_002844) sulA 2900754..2901263 (+) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  PX809_RS14225 (PX809_002845) ompA 2901620..2902660 (+) 1041 WP_000750416.1 porin OmpA -
  PX809_RS14230 (PX809_002846) matP 2902736..2903188 (-) 453 WP_000877161.1 macrodomain Ter protein MatP -
  PX809_RS14235 (PX809_002847) ycbZ 2903374..2905134 (+) 1761 WP_000156518.1 Lon protease family protein -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=726135 PX809_RS14215 WP_000839153.1 2899906..2900535(-) (sxy/tfoX) [Escherichia coli strain MRE162 substr. NOR]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=726135 PX809_RS14215 WP_000839153.1 2899906..2900535(-) (sxy/tfoX) [Escherichia coli strain MRE162 substr. NOR]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterProScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q32HU7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1