Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   J3989_RS00560 Genome accession   NZ_AP024489
Coordinates   130477..131445 (+) Length   322 a.a.
NCBI ID   WP_207177122.1    Uniprot ID   -
Organism   Neisseria meningitidis strain NIID777     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 125477..136445
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J3989_RS00540 - 126085..126231 (-) 147 WP_002240086.1 hypothetical protein -
  J3989_RS00545 (NMNIID777_01040) fetA 126870..129044 (+) 2175 WP_002226762.1 TonB-dependent siderophore receptor FetA/FrpB -
  J3989_RS00550 (NMNIID777_01050) - 129348..130313 (+) 966 WP_207177119.1 siderophore ABC transporter substrate-binding protein -
  J3989_RS00555 - 130331..130480 (+) 150 WP_162051164.1 hypothetical protein -
  J3989_RS00560 (NMNIID777_01060) ceuB 130477..131445 (+) 969 WP_207177122.1 ABC transporter permease Machinery gene
  J3989_RS00565 (NMNIID777_01070) - 131435..132409 (+) 975 WP_002219909.1 iron chelate uptake ABC transporter family permease subunit -
  J3989_RS00570 (NMNIID777_01080) - 132454..133080 (+) 627 WP_101171776.1 FmdE family protein -
  J3989_RS00575 (NMNIID777_01090) - 133164..133922 (+) 759 WP_207177124.1 ABC transporter ATP-binding protein -
  J3989_RS00580 (NMNIID777_01100) - 133981..134319 (-) 339 WP_002214902.1 P-II family nitrogen regulator -
  J3989_RS00585 - 134414..134626 (+) 213 WP_003710665.1 hypothetical protein -

Sequence

Protein


Download         Length: 322 a.a.        Molecular weight: 34476.78 Da        Isoelectric Point: 10.0891

>NTDB_id=72612 J3989_RS00560 WP_207177122.1 130477..131445(+) (ceuB) [Neisseria meningitidis strain NIID777]
MTAKPFSLNLTNLLLLAVLFAVSLSVGVADFRWSDVFSLSDSQQVMFISRLPRTFAIVLTGASMAVAGMIMQILMRNRFV
EPSMAGASQSAALGLLLMSLLLPAAPLPVKMSVAAVAALIGMLVFMMLIRRLPPTAQLMVPLVGIIFGGVIEAVATFVAY
EFEMLQMLGVWQQGDFSSVLLGRYELLWITGGLAVFAYLIADRLTILGLGETVSVNLGLNRTAVLWSGLIIVALITSLVI
VTVGNIPFVGLVVPNIISRLIGDRLRQSLPAVALLGASLVLLCDIIGRVIVFPFEIPVSTVFGVLGTALFLWLLLRKPAH
AV

Nucleotide


Download         Length: 969 bp        

>NTDB_id=72612 J3989_RS00560 WP_207177122.1 130477..131445(+) (ceuB) [Neisseria meningitidis strain NIID777]
ATGACTGCCAAACCTTTTTCCCTCAACCTGACCAACCTCCTGCTGCTGGCGGTGTTGTTTGCCGTCAGCCTGTCGGTGGG
CGTTGCCGATTTCCGCTGGTCGGATGTATTTTCGCTGTCCGACAGCCAGCAGGTTATGTTCATCAGCCGCCTGCCGCGCA
CGTTTGCGATTGTGCTGACGGGCGCGTCGATGGCGGTGGCGGGGATGATTATGCAGATTTTGATGCGCAACCGTTTTGTC
GAACCTTCTATGGCGGGCGCGAGCCAAAGCGCGGCTTTGGGTTTGCTTCTGATGTCCCTGCTGCTGCCTGCCGCGCCGCT
GCCGGTCAAAATGTCGGTTGCCGCCGTTGCCGCGTTAATCGGAATGCTGGTGTTTATGATGCTTATCCGCCGTCTGCCGC
CGACGGCGCAACTGATGGTGCCGCTGGTGGGGATTATTTTCGGCGGCGTGATTGAGGCAGTGGCGACGTTTGTCGCGTAT
GAGTTTGAGATGCTGCAAATGTTGGGCGTGTGGCAGCAGGGCGATTTTTCGAGCGTGCTGCTGGGGCGGTACGAGCTGCT
TTGGATTACGGGCGGTTTGGCGGTGTTTGCCTATCTGATTGCCGACCGGCTGACGATTTTGGGGCTGGGTGAGACGGTCA
GCGTGAATTTGGGTTTGAACCGGACGGCGGTGTTGTGGTCAGGTTTGATTATTGTGGCTTTGATTACGTCGCTGGTTATC
GTTACGGTCGGCAATATTCCGTTTGTCGGGCTGGTCGTGCCGAACATCATCAGCCGCCTGATAGGCGACAGGCTGCGCCA
AAGCCTGCCTGCGGTGGCCTTGTTGGGCGCGTCTTTGGTTTTATTGTGCGACATTATCGGACGTGTGATTGTGTTTCCGT
TTGAAATTCCGGTCTCTACGGTTTTTGGTGTGTTGGGTACGGCTTTGTTTTTGTGGCTTTTGTTAAGGAAACCTGCTCAT
GCCGTCTGA

Domains

Predicted by InterProScan.

FecCD transport family (FecCD)

(15-316)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

41.86

93.478

0.391