Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   J3989_RS00505 Genome accession   NZ_AP024489
Coordinates   112706..113212 (+) Length   168 a.a.
NCBI ID   WP_002226759.1    Uniprot ID   Q9JWB0
Organism   Neisseria meningitidis strain NIID777     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 107706..118212
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J3989_RS00470 (NMNIID777_00910) - 107717..109252 (+) 1536 WP_002221654.1 sodium-dependent transporter -
  J3989_RS00480 (NMNIID777_00920) lysA 109401..110621 (-) 1221 WP_207177104.1 diaminopimelate decarboxylase -
  J3989_RS00485 (NMNIID777_00930) - 110632..110802 (-) 171 WP_002226757.1 lipoprotein -
  J3989_RS00490 (NMNIID777_00940) cyaY 110873..111196 (+) 324 WP_002218099.1 iron donor protein CyaY -
  J3989_RS00495 (NMNIID777_00950) - 111223..112239 (+) 1017 WP_002225852.1 YeiH family protein -
  J3989_RS00500 (NMNIID777_00960) - 112265..112684 (+) 420 WP_014574263.1 DUF2251 domain-containing protein -
  J3989_RS00505 (NMNIID777_00970) luxS 112706..113212 (+) 507 WP_002226759.1 S-ribosylhomocysteine lyase Regulator
  J3989_RS00510 (NMNIID777_00980) polA 113358..116150 (+) 2793 WP_207177108.1 DNA polymerase I -

Sequence

Protein


Download         Length: 168 a.a.        Molecular weight: 18725.49 Da        Isoelectric Point: 5.5451

>NTDB_id=72611 J3989_RS00505 WP_002226759.1 112706..113212(+) (luxS) [Neisseria meningitidis strain NIID777]
MPLLDSFKVDHTRMHAPAVRVAKTMTTPKGDTITVFDLRFCVPNKEILPEKGIHTLEHLFAGFMRDHLNGNGVEIIDISP
MGCRTGFYMSLIGTPSEQQVADAWLASMQDVLNVKDQSKIPELNEYQCGTYQMHSLAEAQQIAQNVLARKVAVNKNEELT
LDEGLLNA

Nucleotide


Download         Length: 507 bp        

>NTDB_id=72611 J3989_RS00505 WP_002226759.1 112706..113212(+) (luxS) [Neisseria meningitidis strain NIID777]
ATGCCCCTGTTAGACAGTTTCAAAGTCGATCACACCCGTATGCATGCCCCCGCCGTACGCGTGGCGAAAACCATGACTAC
GCCCAAAGGCGACACCATTACCGTGTTTGACCTGCGCTTTTGCGTTCCCAACAAAGAAATCCTGCCTGAAAAAGGCATAC
ACACGCTGGAGCATTTGTTCGCAGGTTTTATGCGCGACCACTTGAACGGCAACGGCGTGGAAATCATCGACATTTCCCCG
ATGGGCTGCCGCACCGGTTTTTATATGAGTTTGATTGGCACGCCTTCCGAACAGCAGGTTGCCGATGCGTGGCTGGCTTC
GATGCAGGATGTTTTGAATGTCAAAGACCAAAGCAAAATCCCCGAGTTGAACGAATACCAATGCGGCACTTATCAAATGC
ACTCGCTTGCCGAAGCGCAGCAAATCGCGCAAAACGTGTTGGCGCGCAAAGTGGCGGTGAACAAAAATGAAGAGCTGACG
CTGGATGAAGGGCTGCTGAACGCCTAA

Domains

Predicted by InterProScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-153)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q9JWB0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

77.246

99.405

0.768

Multiple sequence alignment