Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   NX081_RS11875 Genome accession   NZ_CP103856
Coordinates   2378496..2379104 (+) Length   202 a.a.
NCBI ID   WP_012117837.1    Uniprot ID   A0AAP5V0D3
Organism   Bacillus velezensis strain SRCM116265     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2373496..2384104
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NX081_RS11835 (NX081_11835) - 2374549..2375055 (-) 507 WP_012117833.1 PTS glucose transporter subunit IIA -
  NX081_RS11840 (NX081_11840) - 2375194..2375607 (+) 414 WP_017418017.1 Hsp20/alpha crystallin family protein -
  NX081_RS11845 (NX081_11845) - 2375637..2376071 (-) 435 WP_060562800.1 YppG family protein -
  NX081_RS11850 (NX081_11850) - 2376258..2376440 (+) 183 WP_003153532.1 YppF family protein -
  NX081_RS11855 (NX081_11855) - 2376479..2376847 (-) 369 WP_060562799.1 YppE family protein -
  NX081_RS11860 (NX081_11860) - 2376893..2377138 (-) 246 WP_014418233.1 DUF5446 family protein -
  NX081_RS11865 (NX081_11865) sspM 2377344..2377448 (+) 105 WP_003153525.1 acid-soluble spore protein SspM -
  NX081_RS11870 (NX081_11870) - 2377492..2378454 (-) 963 WP_014418234.1 DUF2515 domain-containing protein -
  NX081_RS11875 (NX081_11875) recU 2378496..2379104 (+) 609 WP_012117837.1 Holliday junction resolvase RecU Machinery gene
  NX081_RS11880 (NX081_11880) - 2379143..2381926 (+) 2784 WP_060562798.1 PBP1A family penicillin-binding protein -
  NX081_RS11885 (NX081_11885) - 2382004..2382495 (-) 492 WP_052827590.1 YpoC family protein -
  NX081_RS11890 (NX081_11890) nth 2382492..2383151 (-) 660 WP_060562797.1 endonuclease III -
  NX081_RS11895 (NX081_11895) dnaD 2383170..2383868 (-) 699 WP_003153516.1 DNA replication protein DnaD -

Sequence

Protein


Download         Length: 202 a.a.        Molecular weight: 23666.75 Da        Isoelectric Point: 9.5778

>NTDB_id=726086 NX081_RS11875 WP_012117837.1 2378496..2379104(+) (recU) [Bacillus velezensis strain SRCM116265]
MIRYPNGKTFQPNKTVSSQNSQKRSHSYSNRGMTLEDDLNETNKYYLANQIAVIHKKPTPVQIVNVHYPKRSAAVIKEAY
FKQSSTTDYNGIYKGRYIDFEAKETKNKTAFPLQNFHDHQIEHMKQVVRQDGICFVIISAFGKVYFLEADKLFVFWERKE
NNGRKSIRKDELEDASFPISLGYSPRIDYISIIEQLYFSQEQ

Nucleotide


Download         Length: 609 bp        

>NTDB_id=726086 NX081_RS11875 WP_012117837.1 2378496..2379104(+) (recU) [Bacillus velezensis strain SRCM116265]
GTGATTCGGTACCCGAATGGAAAAACTTTTCAGCCGAACAAAACGGTTTCATCCCAAAACAGCCAGAAACGGTCCCATTC
ATACAGTAATCGCGGCATGACCCTCGAAGACGACCTGAATGAAACGAATAAGTATTATCTGGCTAACCAAATTGCTGTCA
TTCACAAAAAGCCGACACCCGTCCAGATTGTAAACGTCCACTATCCGAAAAGAAGCGCCGCAGTCATTAAGGAAGCTTAT
TTTAAACAGTCTTCAACAACTGACTACAACGGCATTTATAAAGGGCGCTACATTGATTTTGAGGCAAAAGAAACAAAAAA
CAAAACGGCATTTCCCCTGCAGAATTTTCACGATCATCAGATTGAGCATATGAAGCAGGTGGTCAGACAAGACGGCATTT
GTTTTGTTATTATATCCGCTTTCGGAAAGGTTTATTTCCTCGAAGCCGACAAGCTGTTTGTCTTTTGGGAGAGAAAGGAG
AACAATGGCAGAAAATCAATTCGCAAAGACGAATTAGAAGATGCTTCCTTTCCGATTTCCCTTGGATACTCACCGAGAAT
TGATTATATTAGTATTATTGAACAGCTTTATTTTTCGCAGGAACAGTAG

Domains

Predicted by InterproScan.

Recombination protein U (RecU)

(31-193)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

90.452

98.515

0.891