Detailed information    

insolico Bioinformatically predicted

Overview

Name   comK   Type   Regulator
Locus tag   NX081_RS05440 Genome accession   NZ_CP103856
Coordinates   1057378..1057956 (+) Length   192 a.a.
NCBI ID   WP_003155179.1    Uniprot ID   G1BIW7
Organism   Bacillus velezensis strain SRCM116265     
Function   activate transcription of late competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1052378..1062956
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NX081_RS21150 - 1052879..1053394 (-) 516 WP_370529535.1 methyl-accepting chemotaxis protein -
  NX081_RS21155 - 1053686..1054060 (-) 375 Protein_1003 protoglobin domain-containing protein -
  NX081_RS05425 (NX081_05425) - 1054293..1055816 (-) 1524 WP_015239526.1 FAD-dependent oxidoreductase -
  NX081_RS05430 (NX081_05430) - 1055941..1056798 (+) 858 WP_015239527.1 SDR family oxidoreductase -
  NX081_RS05435 (NX081_05435) - 1056829..1057062 (-) 234 WP_012117233.1 IDEAL domain-containing protein -
  NX081_RS05440 (NX081_05440) comK 1057378..1057956 (+) 579 WP_003155179.1 competence protein ComK Regulator
  NX081_RS05445 (NX081_05445) - 1058102..1058470 (+) 369 WP_045207079.1 iron chaperone -
  NX081_RS05450 (NX081_05450) - 1058497..1058868 (+) 372 WP_060562116.1 iron chaperone -
  NX081_RS05455 (NX081_05455) - 1058991..1059500 (+) 510 WP_060562117.1 MepB family protein -
  NX081_RS05460 (NX081_05460) - 1059729..1060439 (-) 711 WP_003155170.1 YrpD family protein -
  NX081_RS05465 (NX081_05465) - 1060635..1060904 (+) 270 WP_003155168.1 excalibur calcium-binding domain-containing protein -
  NX081_RS05470 (NX081_05470) - 1060937..1061254 (-) 318 WP_003155166.1 YbjQ family protein -
  NX081_RS05475 (NX081_05475) - 1061295..1062764 (-) 1470 WP_060562118.1 sodium:solute symporter -

Sequence

Protein


Download         Length: 192 a.a.        Molecular weight: 22315.58 Da        Isoelectric Point: 8.1419

>NTDB_id=726067 NX081_RS05440 WP_003155179.1 1057378..1057956(+) (comK) [Bacillus velezensis strain SRCM116265]
MCQKTHAPLESYEVNRSTIAVLPEEIDGKMGSKVIEKDCILYVSMKPIHIIDRSCRYFGSSYAGRKAGTYEAIKISHKPP
IMVDPSNHIFLFPTLSSARPQCGWISHVHVKDFQPTAFDDTAVTFSNGKTMELEVSYHSFENQVYRTAYLRTTFQDRMGS
HIPKRQEFMLYPKEERTRMIYDFILRELGERY

Nucleotide


Download         Length: 579 bp        

>NTDB_id=726067 NX081_RS05440 WP_003155179.1 1057378..1057956(+) (comK) [Bacillus velezensis strain SRCM116265]
ATGTGCCAGAAAACACACGCACCCTTAGAAAGCTACGAAGTAAATCGTTCAACCATCGCTGTTTTGCCTGAGGAAATAGA
CGGTAAAATGGGGTCGAAGGTCATTGAAAAAGACTGCATTCTGTATGTCAGCATGAAGCCGATTCACATCATCGACAGAA
GCTGCCGCTACTTTGGCTCCAGCTATGCCGGGAGAAAAGCGGGAACATATGAAGCGATTAAAATTTCTCACAAGCCGCCG
ATTATGGTGGACCCTTCAAATCACATCTTTTTATTCCCTACACTTTCTTCTGCAAGGCCTCAATGCGGCTGGATATCTCA
TGTGCACGTTAAAGATTTTCAACCGACGGCATTTGATGACACAGCGGTCACGTTCTCAAACGGCAAAACGATGGAACTGG
AAGTATCCTATCATTCTTTTGAAAATCAGGTTTACAGAACCGCCTATCTCAGAACCACTTTTCAGGACAGGATGGGCAGT
CATATCCCGAAGCGGCAGGAATTCATGCTGTATCCGAAAGAAGAGCGGACAAGAATGATCTACGACTTTATTTTGCGGGA
GCTGGGGGAGAGATATTAG

Domains

Predicted by InterproScan.

ComK protein (ComK)

(10-158)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G1BIW7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comK Bacillus subtilis subsp. subtilis str. 168

82.292

100

0.823