Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   NX081_RS01805 Genome accession   NZ_CP103856
Coordinates   340320..340757 (-) Length   145 a.a.
NCBI ID   WP_060563062.1    Uniprot ID   -
Organism   Bacillus velezensis strain SRCM116265     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 335320..345757
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NX081_RS01780 (NX081_01780) - 336339..337475 (+) 1137 WP_052827030.1 zinc-dependent alcohol dehydrogenase -
  NX081_RS01785 (NX081_01785) - 337490..337924 (+) 435 WP_007409358.1 RDD family protein -
  NX081_RS01790 (NX081_01790) - 337996..338319 (+) 324 WP_060563059.1 YckD family protein -
  NX081_RS01795 (NX081_01795) - 338424..339860 (+) 1437 WP_060563060.1 glycoside hydrolase family 1 protein -
  NX081_RS01800 (NX081_01800) nin/comJ 339901..340299 (-) 399 WP_060563061.1 competence protein ComJ Regulator
  NX081_RS01805 (NX081_01805) nucA/comI 340320..340757 (-) 438 WP_060563062.1 NucA/NucB deoxyribonuclease domain-containing protein Machinery gene
  NX081_RS01810 (NX081_01810) hxlB 341116..341673 (-) 558 WP_007409354.1 6-phospho-3-hexuloisomerase -
  NX081_RS01815 (NX081_01815) hxlA 341670..342305 (-) 636 WP_060563063.1 3-hexulose-6-phosphate synthase -
  NX081_RS01820 (NX081_01820) - 342537..342899 (+) 363 WP_007409352.1 helix-turn-helix domain-containing protein -

Sequence

Protein


Download         Length: 145 a.a.        Molecular weight: 16086.38 Da        Isoelectric Point: 8.4850

>NTDB_id=726056 NX081_RS01805 WP_060563062.1 340320..340757(-) (nucA/comI) [Bacillus velezensis strain SRCM116265]
MKTLKALLLILIIIAGAVAALIKGDLFSDNEQTVQKSDYDKVILFPSDRYPETAKHIKDAIKEGHSSICTIDRDGVHKRR
EQSLKHVPVKTGYDRDEWPMAVCKQGGNNASVEYISPADNRGAGSWVGHQLTNDPDGTRVLFKIK

Nucleotide


Download         Length: 438 bp        

>NTDB_id=726056 NX081_RS01805 WP_060563062.1 340320..340757(-) (nucA/comI) [Bacillus velezensis strain SRCM116265]
TTGAAAACATTAAAAGCACTGCTGCTTATTCTTATCATCATTGCCGGAGCAGTCGCGGCCCTGATCAAGGGTGATCTTTT
CTCAGATAACGAGCAGACCGTTCAGAAGAGTGATTACGACAAAGTAATCTTATTTCCGTCCGATCGATATCCGGAAACAG
CAAAGCATATTAAGGACGCGATAAAAGAAGGACATTCCAGCATATGCACCATTGACAGAGACGGAGTACATAAGCGGCGT
GAGCAATCTCTTAAACATGTGCCCGTCAAAACGGGATACGATAGAGATGAATGGCCGATGGCGGTTTGTAAACAGGGCGG
AAATAATGCCTCCGTAGAATATATTTCTCCGGCAGACAACCGCGGAGCCGGCTCTTGGGTCGGACACCAGCTTACCAATG
ATCCCGACGGAACGAGAGTATTATTTAAAATCAAGTAA

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(49-131)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

73.81

86.897

0.641