Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   NX081_RS00245 Genome accession   NZ_CP103856
Coordinates   43825..44115 (-) Length   96 a.a.
NCBI ID   WP_169510469.1    Uniprot ID   -
Organism   Bacillus velezensis strain SRCM116265     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 38825..49115
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NX081_RS00205 (NX081_00205) darA 38842..39171 (+) 330 WP_004264734.1 cyclic di-AMP receptor DarA -
  NX081_RS00210 (NX081_00210) - 39184..39624 (+) 441 WP_004264730.1 YaaR family protein -
  NX081_RS00215 (NX081_00215) holB 39636..40625 (+) 990 WP_007409919.1 DNA polymerase III subunit delta' -
  NX081_RS00220 (NX081_00220) ricT 40628..41455 (+) 828 WP_004264723.1 competence/sporulation regulator complex protein RicT -
  NX081_RS00225 (NX081_00225) yabA 41470..41829 (+) 360 WP_004264720.1 replication initiation-control protein YabA -
  NX081_RS00230 (NX081_00230) - 41890..42633 (+) 744 WP_004264717.1 tRNA1(Val) (adenine(37)-N6)-methyltransferase -
  NX081_RS00235 (NX081_00235) - 42620..42919 (+) 300 WP_060561981.1 GIY-YIG nuclease family protein -
  NX081_RS00240 (NX081_00240) rsmI 42894..43775 (+) 882 WP_060561980.1 16S rRNA (cytidine(1402)-2'-O)-methyltransferase -
  NX081_RS00245 (NX081_00245) abrB 43825..44115 (-) 291 WP_169510469.1 transition state genes transcriptional regulator AbrB Regulator
  NX081_RS00250 (NX081_00250) metG 44599..46590 (+) 1992 WP_060561979.1 methionine--tRNA ligase -
  NX081_RS00255 (NX081_00255) - 46666..47433 (+) 768 WP_029326250.1 TatD family hydrolase -
  NX081_RS00260 (NX081_00260) - 47568..48893 (+) 1326 WP_023356663.1 G5 and 3D domain-containing protein -

Sequence

Protein


Download         Length: 96 a.a.        Molecular weight: 10753.57 Da        Isoelectric Point: 6.3482

>NTDB_id=726051 NX081_RS00245 WP_169510469.1 43825..44115(-) (abrB) [Bacillus velezensis strain SRCM116265]
MLMKSTGIVRKVDELGRVVIPIELRRTLGIAEKDALEIYVDDEKIILKKYKPNMTCQVTGEVSDDNLKLAGGKLVLSKEG
AEQIISEIQNQLQNQK

Nucleotide


Download         Length: 291 bp        

>NTDB_id=726051 NX081_RS00245 WP_169510469.1 43825..44115(-) (abrB) [Bacillus velezensis strain SRCM116265]
CTGTTAATGAAATCTACTGGTATCGTACGTAAAGTTGATGAACTTGGACGCGTCGTTATCCCTATCGAACTTCGCCGTAC
ACTGGGCATCGCAGAAAAAGACGCTCTTGAAATTTATGTTGATGATGAAAAAATCATCCTTAAAAAATATAAACCAAACA
TGACTTGCCAAGTAACTGGTGAAGTTTCTGATGATAACCTTAAACTTGCCGGCGGCAAATTGGTACTCAGCAAAGAAGGC
GCTGAGCAAATCATCTCTGAAATTCAAAACCAGCTTCAAAACCAAAAATAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(55-90)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(10-52)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

97.917

100

0.979