Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Machinery gene
Locus tag   NY025_RS15365 Genome accession   NZ_CP103852
Coordinates   1600147..1602696 (+) Length   849 a.a.
NCBI ID   WP_197365234.1    Uniprot ID   -
Organism   Ralstonia pseudosolanacearum strain LMG 9673     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1595147..1607696
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NY025_RS15345 (NY025_15345) - 1596164..1597243 (-) 1080 WP_197365236.1 hypothetical protein -
  NY025_RS15350 (NY025_15350) - 1597316..1598566 (+) 1251 WP_197365235.1 lipoprotein-releasing ABC transporter permease subunit -
  NY025_RS15355 (NY025_15355) lolD 1598559..1599293 (+) 735 WP_138928456.1 lipoprotein-releasing ABC transporter ATP-binding protein LolD -
  NY025_RS15360 (NY025_15360) - 1599322..1600137 (+) 816 WP_193025983.1 TatD family hydrolase -
  NY025_RS15365 (NY025_15365) comA 1600147..1602696 (+) 2550 WP_197365234.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  NY025_RS15370 (NY025_15370) - 1602802..1604283 (+) 1482 WP_193025981.1 circularly permuted type 2 ATP-grasp protein -
  NY025_RS15375 (NY025_15375) - 1604346..1605296 (+) 951 WP_011001072.1 alpha-E domain-containing protein -
  NY025_RS15380 (NY025_15380) - 1605354..1606190 (+) 837 WP_193025980.1 transglutaminase family protein -
  NY025_RS15385 (NY025_15385) - 1606274..1607188 (+) 915 WP_193025979.1 peptidase -

Sequence

Protein


Download         Length: 849 a.a.        Molecular weight: 91391.23 Da        Isoelectric Point: 10.2493

>NTDB_id=726013 NY025_RS15365 WP_197365234.1 1600147..1602696(+) (comA) [Ralstonia pseudosolanacearum strain LMG 9673]
MRALLIGFVAGCMVLQMRPSLAPVWQPVLLGLACLLAMAWLRRGGRLPRLVPVMAVLAAACAGFGWSDWRAQQRLSVVLA
PEWEGKDIRATGVVAELPQITEDATRFLFRIESSDAGDAVPPRVRLSWYGLRSWHERQREAEAATDRRAGIPDLQPGQRW
QLTLRLKRPHSLMNPGGFDGEYAMLADDVRAAGYVYTGKRARNALMGDADADAGVDVGLHVERWRAAVRRHLLAALPEAR
YAPVIVALVVGDQSGIAQADWERFRRTGISHLVSISGLHITMIAGLFGALWMALWRRSFGLARWLRTPLPLRMPAQRAGA
VAAMAAAFAYCLLAGMGVPAQRTLLMLATVAVARLADRSVPVSLSLCWAAALVVLVDPWAVMSAGGWLSFGAVAVIFLAA
RIVAADARDDGRRPAWPVRAWRGLRGAARVQLAVTFGLLPLTLLLFQQVSVVSAVANALAIPVVSFVTTPLALMGAALPE
PWSQPVLVWAEASFAWLMPWLDALALPDWSVWVAPAPPAWAWGLAVVGVPLLLVPGGHRAWAWRAQGAVLLLPMLLARAP
APPPGEFRMVAFDIGQGAATLVETAGHRLLFDTGPRQGDLADAADRVIVPYLRGHGVQAIDTLVVSHEDSDHAGGTETVM
AGVPVRTMLASLPPGHRLERQARALGIEPAGCAAGQRWAWDGVAFEILHPVPTPSDRAAVSSNARSCVLRIANARYAAML
AGDIGRAQEAVLIAAEAPERLMADILLVPHHGSRTSSSGAFLDAVSPQVAVFQVGYRNRYGHPHPQVWQRYGARGIERLR
TDATGAVVIETRGDALAVRTARSMRPRYWSSALEVAALAETTEPTGAQP

Nucleotide


Download         Length: 2550 bp        

>NTDB_id=726013 NY025_RS15365 WP_197365234.1 1600147..1602696(+) (comA) [Ralstonia pseudosolanacearum strain LMG 9673]
ATGCGCGCCCTGCTGATCGGCTTCGTCGCGGGGTGCATGGTGCTGCAGATGCGGCCGTCGCTGGCGCCGGTGTGGCAGCC
GGTGCTGCTTGGGCTCGCTTGCCTGCTGGCGATGGCGTGGCTGCGGCGCGGCGGGCGGTTGCCCAGGCTCGTTCCCGTGA
TGGCCGTGCTGGCGGCGGCCTGCGCCGGCTTCGGCTGGAGCGACTGGCGCGCGCAGCAGCGCTTGTCCGTGGTGCTGGCG
CCCGAGTGGGAGGGCAAGGACATCCGCGCGACGGGCGTCGTGGCCGAGCTGCCCCAGATCACCGAAGACGCCACGCGTTT
CCTGTTCCGGATTGAATCCAGCGACGCGGGCGATGCCGTACCGCCGCGCGTGCGGCTGTCGTGGTACGGCCTGCGCAGCT
GGCACGAGCGGCAGCGGGAGGCGGAGGCCGCCACCGATCGCCGCGCCGGCATTCCCGATCTGCAGCCCGGCCAGCGCTGG
CAGCTGACGCTGCGGCTCAAGCGGCCGCACAGCCTGATGAATCCCGGCGGCTTCGACGGCGAATACGCGATGCTCGCCGA
CGATGTCCGTGCCGCGGGCTACGTGTACACGGGCAAACGCGCACGCAATGCGTTGATGGGCGATGCCGATGCCGATGCCG
GTGTCGATGTCGGTCTCCATGTCGAGCGCTGGCGCGCCGCGGTGCGGCGGCACCTCTTGGCCGCGCTGCCCGAGGCTCGC
TACGCGCCGGTGATCGTCGCCCTGGTGGTGGGCGACCAGAGCGGTATCGCGCAGGCGGATTGGGAGCGCTTCCGCCGCAC
CGGCATCAGCCATCTCGTCAGCATTTCCGGTCTGCACATCACGATGATCGCCGGGCTGTTCGGCGCGCTGTGGATGGCGC
TGTGGCGGCGTTCGTTCGGCCTGGCCCGCTGGCTGCGCACACCGTTGCCGCTGCGCATGCCGGCCCAGCGTGCCGGCGCC
GTTGCCGCCATGGCGGCGGCGTTCGCCTATTGCCTGCTGGCGGGGATGGGCGTGCCGGCGCAGCGCACGCTGCTGATGCT
CGCGACCGTTGCCGTGGCGCGGCTGGCCGATCGCAGCGTGCCGGTCAGCCTGTCGCTGTGCTGGGCGGCGGCCTTGGTGG
TGCTGGTGGATCCGTGGGCGGTCATGTCGGCGGGCGGCTGGCTGTCATTCGGCGCCGTGGCGGTCATCTTCCTGGCCGCG
CGGATCGTTGCCGCCGATGCGCGGGACGACGGTCGCCGGCCCGCCTGGCCGGTGCGCGCCTGGCGCGGCCTGCGCGGCGC
CGCGCGCGTCCAGCTGGCCGTGACGTTCGGCCTGCTGCCGTTGACCTTGCTGCTGTTCCAGCAGGTCTCGGTGGTGTCGG
CCGTGGCCAACGCGCTGGCGATCCCGGTGGTCAGCTTTGTCACGACGCCGCTGGCGCTGATGGGCGCGGCGTTGCCCGAG
CCATGGTCGCAGCCGGTGCTGGTGTGGGCCGAGGCCAGCTTCGCCTGGCTCATGCCGTGGCTGGATGCGCTGGCGCTGCC
CGACTGGTCGGTGTGGGTGGCGCCCGCCCCGCCGGCCTGGGCGTGGGGGCTGGCCGTGGTCGGCGTGCCGTTGCTGCTCG
TGCCGGGCGGGCATCGCGCCTGGGCCTGGCGGGCGCAGGGCGCGGTGCTGTTGCTGCCGATGCTGCTGGCACGCGCACCG
GCGCCGCCGCCGGGCGAGTTCCGCATGGTCGCGTTCGACATCGGCCAGGGCGCCGCCACGCTGGTCGAGACGGCCGGCCA
CCGGCTGCTGTTCGATACCGGTCCGCGCCAAGGCGACCTGGCCGATGCCGCCGATCGCGTGATCGTCCCGTATCTGCGCG
GACATGGCGTGCAGGCCATCGACACGCTGGTGGTCAGCCACGAGGACAGCGATCACGCCGGCGGCACCGAAACGGTGATG
GCAGGGGTGCCGGTGCGCACCATGCTGGCGTCCCTGCCGCCCGGCCACCGGCTGGAGCGGCAGGCCCGCGCGCTCGGCAT
CGAGCCCGCCGGCTGCGCGGCCGGGCAGCGCTGGGCATGGGACGGCGTCGCCTTCGAAATCCTGCATCCGGTGCCGACGC
CCTCCGATCGGGCGGCCGTGTCCAGCAATGCCCGCAGCTGCGTGCTGCGCATCGCCAACGCGCGCTACGCCGCCATGCTG
GCCGGCGACATCGGCCGCGCCCAGGAAGCGGTGCTGATTGCCGCCGAAGCCCCGGAGCGGCTCATGGCAGATATCTTGCT
TGTGCCCCATCACGGCAGCAGGACGAGCTCCAGCGGCGCGTTCCTGGACGCGGTCTCTCCGCAGGTGGCGGTGTTCCAGG
TCGGCTACCGCAACCGGTACGGTCATCCGCATCCGCAGGTCTGGCAGCGCTACGGCGCGCGCGGCATCGAGCGGCTGCGC
ACCGATGCCACCGGGGCCGTCGTCATCGAGACGCGCGGCGATGCGCTGGCGGTGCGGACGGCGCGGTCGATGCGGCCGCG
CTACTGGTCCTCGGCGCTGGAGGTGGCCGCCTTGGCAGAGACCACGGAGCCGACGGGCGCGCAGCCGTAA

Domains

Predicted by InterproScan.

Beta-lactamase superfamily domain (Lactamase_B_2)

(587-747)

Competence protein (Competence)

(248-534)

Domain of unknown function (DUF4131) (DUF4131)

(24-198)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Ralstonia pseudosolanacearum GMI1000

96.466

100

0.965