Detailed information
Bioinformatically predicted
Overview
| Name | fimT | Type | Machinery gene |
| Locus tag | FLY89_RS16230 | Genome accession | NZ_AP024415 |
| Coordinates | 3364673..3365188 (+) | Length | 171 a.a. |
| NCBI ID | WP_000477147.1 | Uniprot ID | - |
| Organism | Acinetobacter baumannii strain NIPH17_0019 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 3359673..3370188
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| FLY89_RS16210 (KHAB170019_32460) | - | 3359992..3361452 (+) | 1461 | WP_000004971.1 | amino acid permease | - |
| FLY89_RS16215 (KHAB170019_32470) | - | 3361729..3362934 (+) | 1206 | WP_000512707.1 | RtcB family protein | - |
| FLY89_RS16220 (KHAB170019_32480) | - | 3362953..3363096 (+) | 144 | WP_162138624.1 | hypothetical protein | - |
| FLY89_RS16225 (KHAB170019_32490) | omp38 | 3363221..3364291 (-) | 1071 | WP_000777882.1 | outer membrane protein Omp38 | - |
| FLY89_RS16230 (KHAB170019_32500) | fimT | 3364673..3365188 (+) | 516 | WP_000477147.1 | GspH/FimT family pseudopilin | Machinery gene |
| FLY89_RS16235 (KHAB170019_32510) | - | 3365297..3366472 (+) | 1176 | WP_000129968.1 | thiolase family protein | - |
| FLY89_RS16240 (KHAB170019_32520) | - | 3366599..3367042 (+) | 444 | WP_001176580.1 | VOC family protein | - |
| FLY89_RS16245 (KHAB170019_32530) | - | 3367085..3367438 (-) | 354 | WP_000457787.1 | DMT family transporter | - |
| FLY89_RS16250 (KHAB170019_32540) | - | 3367521..3368006 (-) | 486 | WP_000935249.1 | DUF934 domain-containing protein | - |
| FLY89_RS16255 (KHAB170019_32550) | - | 3367999..3369642 (-) | 1644 | WP_000281766.1 | nitrite/sulfite reductase | - |
Sequence
Protein
Download Length: 171 a.a. Molecular weight: 19587.81 Da Isoelectric Point: 8.4960
>NTDB_id=72587 FLY89_RS16230 WP_000477147.1 3364673..3365188(+) (fimT) [Acinetobacter baumannii strain NIPH17_0019]
MFKSPGFTIVELTITLVILVIMSVIAIPLYHQFMASVELKNTPRILTIHIQKAKYDAIIRHKNVVLCPSSDQLVCNTNWD
NRVISFVDNNHNLQHDLNEELLTSIDLNHHYGSMKLQRFGKKQNSIIFQGSSGLPIESNGSFIYCSYDQLKNFKLILSKM
GHVRLEELKNC
MFKSPGFTIVELTITLVILVIMSVIAIPLYHQFMASVELKNTPRILTIHIQKAKYDAIIRHKNVVLCPSSDQLVCNTNWD
NRVISFVDNNHNLQHDLNEELLTSIDLNHHYGSMKLQRFGKKQNSIIFQGSSGLPIESNGSFIYCSYDQLKNFKLILSKM
GHVRLEELKNC
Nucleotide
Download Length: 516 bp
>NTDB_id=72587 FLY89_RS16230 WP_000477147.1 3364673..3365188(+) (fimT) [Acinetobacter baumannii strain NIPH17_0019]
ATGTTTAAATCTCCTGGTTTTACTATAGTTGAGCTCACTATAACACTCGTAATTCTTGTGATTATGTCAGTTATAGCCAT
TCCTTTATACCATCAATTTATGGCATCTGTAGAACTAAAAAATACGCCGCGTATACTCACAATTCATATACAAAAAGCCA
AATATGACGCAATTATTAGGCATAAGAATGTTGTTCTTTGTCCAAGTTCTGATCAATTGGTCTGCAATACGAATTGGGAT
AACCGCGTAATCAGCTTTGTAGATAATAACCATAATCTACAGCATGATTTAAATGAAGAGTTATTAACCTCTATAGATCT
TAACCATCACTACGGTTCTATGAAATTACAACGTTTTGGAAAAAAACAAAATAGTATTATTTTTCAAGGTAGTTCTGGAC
TACCCATCGAGTCGAATGGCAGTTTTATCTATTGTTCTTATGACCAGCTTAAAAACTTTAAATTAATTCTTAGCAAAATG
GGCCATGTGCGCTTAGAAGAACTTAAAAATTGTTAG
ATGTTTAAATCTCCTGGTTTTACTATAGTTGAGCTCACTATAACACTCGTAATTCTTGTGATTATGTCAGTTATAGCCAT
TCCTTTATACCATCAATTTATGGCATCTGTAGAACTAAAAAATACGCCGCGTATACTCACAATTCATATACAAAAAGCCA
AATATGACGCAATTATTAGGCATAAGAATGTTGTTCTTTGTCCAAGTTCTGATCAATTGGTCTGCAATACGAATTGGGAT
AACCGCGTAATCAGCTTTGTAGATAATAACCATAATCTACAGCATGATTTAAATGAAGAGTTATTAACCTCTATAGATCT
TAACCATCACTACGGTTCTATGAAATTACAACGTTTTGGAAAAAAACAAAATAGTATTATTTTTCAAGGTAGTTCTGGAC
TACCCATCGAGTCGAATGGCAGTTTTATCTATTGTTCTTATGACCAGCTTAAAAACTTTAAATTAATTCTTAGCAAAATG
GGCCATGTGCGCTTAGAAGAACTTAAAAATTGTTAG
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| fimT | Acinetobacter baylyi ADP1 |
43.373 |
97.076 |
0.421 |