Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   NYR97_RS15445 Genome accession   NZ_CP103836
Coordinates   3612711..3614102 (+) Length   463 a.a.
NCBI ID   WP_316694386.1    Uniprot ID   A0AAU0B9J4
Organism   Xanthomonas hydrangeae strain 22-323     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3607711..3619102
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NYR97_RS15430 (NYR97_15400) cyoC 3609278..3609907 (+) 630 WP_316694379.1 cytochrome o ubiquinol oxidase subunit III -
  NYR97_RS15435 (NYR97_15405) cyoD 3609907..3610242 (+) 336 WP_006450195.1 cytochrome o ubiquinol oxidase subunit IV -
  NYR97_RS15440 (NYR97_15410) - 3610412..3612292 (+) 1881 WP_316694384.1 tetratricopeptide repeat protein -
  NYR97_RS15445 (NYR97_15415) radA 3612711..3614102 (+) 1392 WP_316694386.1 DNA repair protein RadA Machinery gene
  NYR97_RS15450 (NYR97_15420) - 3614548..3614934 (+) 387 WP_316694387.1 DUF805 domain-containing protein -
  NYR97_RS15455 (NYR97_15425) - 3615057..3615842 (-) 786 WP_316698273.1 response regulator transcription factor -
  NYR97_RS15460 (NYR97_15430) - 3616766..3618121 (+) 1356 WP_316698276.1 helix-turn-helix transcriptional regulator -

Sequence

Protein


Download         Length: 463 a.a.        Molecular weight: 48792.10 Da        Isoelectric Point: 7.7122

>NTDB_id=725852 NYR97_RS15445 WP_316694386.1 3612711..3614102(+) (radA) [Xanthomonas hydrangeae strain 22-323]
MAKAKIAYVCGECGAEYNKWQGQCTECGVWNTLREIVLENATPGGKASPAASRRTGWSGKTEAPKITALKDVRQSEQARV
STGIGEFDRVLGGGLVEGAVVLIGGDPGIGKSTLLLQALASMAGTLPVLYVTGEESLAQVAGRAVRLDLPLEGLNALAET
GIENILQHASVARPKLIVADSVQTLWTESLTAAPGSVSQVRESAARLVRYAKETGTAVFLVGHVTKEGGIAGPRVLEHMV
DAVLYFEGESGSRFRLLRAFKNRFGAVNELGVFAMGEKGLKEVSNPSAIFLSGGSTQQPGSCVMVTREGTRPLMVEVQAL
VDASPLSNPRRVAVGLEQNRLAMLLAVLHRHGGIVVGDQDVFVNVVGGIRVQETAADLPVLLAVLSSLRDRPLAEKTIAF
GEVGLSGEIRPVPNGEDRLKEAATHGFKRAIVPKANAPKTTSIKGMEIIAVERLSQALEAAAD

Nucleotide


Download         Length: 1392 bp        

>NTDB_id=725852 NYR97_RS15445 WP_316694386.1 3612711..3614102(+) (radA) [Xanthomonas hydrangeae strain 22-323]
ATGGCGAAGGCAAAAATAGCCTATGTCTGCGGCGAGTGTGGCGCCGAATACAACAAGTGGCAGGGGCAGTGCACCGAGTG
CGGGGTGTGGAATACGCTCAGGGAAATCGTGCTCGAAAACGCAACCCCCGGTGGCAAGGCATCGCCGGCGGCTTCGCGCC
GCACCGGTTGGTCGGGCAAGACCGAGGCGCCCAAGATCACCGCGCTCAAGGACGTGCGCCAATCCGAACAGGCGCGCGTG
TCCACCGGCATCGGCGAGTTCGATCGGGTGCTGGGCGGCGGTCTGGTCGAAGGCGCGGTGGTGTTGATCGGTGGCGACCC
CGGCATCGGCAAGTCGACGTTGTTGCTGCAGGCATTGGCCAGCATGGCCGGTACGCTGCCGGTGCTGTACGTCACCGGCG
AAGAATCGCTGGCCCAGGTCGCAGGACGTGCGGTGCGCCTGGATCTGCCGCTGGAAGGCCTGAATGCGCTGGCCGAAACC
GGCATCGAAAACATCCTGCAGCACGCCAGCGTGGCGCGGCCGAAGCTGATCGTGGCCGACTCGGTACAGACCTTGTGGAC
CGAATCGCTGACCGCAGCGCCGGGCTCGGTGAGCCAGGTGCGCGAGAGCGCGGCGCGGCTGGTGCGCTATGCCAAGGAAA
CCGGCACCGCCGTCTTCCTGGTCGGCCATGTGACCAAGGAAGGCGGCATCGCCGGGCCGCGCGTGCTGGAGCATATGGTC
GATGCGGTGCTGTACTTCGAAGGCGAGAGCGGCAGCCGGTTTCGCTTGCTGCGCGCCTTCAAGAATCGTTTCGGTGCGGT
CAACGAGCTGGGCGTATTCGCGATGGGCGAGAAGGGCCTCAAGGAGGTCTCCAACCCGTCGGCGATCTTCCTGTCCGGCG
GCAGCACCCAGCAGCCCGGCAGTTGCGTGATGGTCACCCGCGAAGGCACCCGGCCGCTGATGGTGGAAGTGCAGGCGCTG
GTGGATGCCTCGCCGTTGTCCAATCCGCGTCGGGTCGCGGTGGGGTTGGAACAGAACCGGCTGGCGATGCTGCTGGCGGT
ACTGCATCGCCATGGCGGCATCGTGGTGGGCGATCAGGACGTCTTCGTCAACGTGGTTGGCGGCATCCGCGTGCAGGAAA
CTGCGGCCGATCTGCCGGTGTTGCTTGCAGTGTTGTCCTCGTTGCGCGACCGGCCATTGGCCGAGAAGACGATCGCCTTC
GGCGAGGTGGGGTTGTCCGGCGAGATCCGCCCGGTACCCAATGGCGAGGACCGCCTGAAAGAAGCCGCCACGCATGGTTT
CAAGCGCGCGATCGTGCCCAAGGCCAATGCACCGAAGACCACCAGCATCAAGGGCATGGAGATCATTGCGGTGGAGCGGC
TGAGCCAGGCCTTGGAAGCGGCGGCTGACTGA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(352-436)

AAA domain (AAA_25)

(90-228)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

48.164

100

0.482
  radA Streptococcus mitis NCTC 12261

43.696

99.352

0.434
  radA Streptococcus pneumoniae Rx1

43.696

99.352

0.434
  radA Streptococcus pneumoniae D39

43.696

99.352

0.434
  radA Streptococcus pneumoniae R6

43.696

99.352

0.434
  radA Streptococcus pneumoniae TIGR4

43.696

99.352

0.434
  radA Streptococcus mitis SK321

43.478

99.352

0.432