Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   NYR97_RS02455 Genome accession   NZ_CP103836
Coordinates   605526..607004 (+) Length   492 a.a.
NCBI ID   WP_316696529.1    Uniprot ID   -
Organism   Xanthomonas hydrangeae strain 22-323     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 600526..612004
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NYR97_RS02440 (NYR97_02425) sucD 601516..602391 (-) 876 WP_006450729.1 succinate--CoA ligase subunit alpha -
  NYR97_RS02445 (NYR97_02430) sucC 602416..603585 (-) 1170 WP_006450728.1 ADP-forming succinate--CoA ligase subunit beta -
  NYR97_RS02450 (NYR97_02435) - 603818..605440 (+) 1623 WP_316696527.1 HAMP domain-containing sensor histidine kinase -
  NYR97_RS02455 (NYR97_02440) pilR 605526..607004 (+) 1479 WP_316696529.1 sigma-54 dependent transcriptional regulator Regulator
  NYR97_RS02460 (NYR97_02445) - 607076..607258 (+) 183 WP_316696530.1 YhfG family protein -
  NYR97_RS02465 (NYR97_02450) - 607255..607872 (+) 618 WP_316696532.1 Fic family protein -
  NYR97_RS02470 (NYR97_02455) pilB 607881..609617 (-) 1737 WP_316696533.1 type IV-A pilus assembly ATPase PilB Machinery gene
  NYR97_RS02475 (NYR97_02460) - 609874..610305 (-) 432 WP_316696535.1 pilin -
  NYR97_RS02480 (NYR97_02465) pilC 610657..611913 (+) 1257 WP_212580037.1 type II secretion system F family protein Machinery gene

Sequence

Protein


Download         Length: 492 a.a.        Molecular weight: 53251.93 Da        Isoelectric Point: 6.6434

>NTDB_id=725843 NYR97_RS02455 WP_316696529.1 605526..607004(+) (pilR) [Xanthomonas hydrangeae strain 22-323]
MGANPDDNCRPSSRWAIVRTMSEPKSALVVDDERDIRELLVLTLGRMGLRISTAANLAEARELLANNPYDLCLTDMRLPD
GNGIELVTEISKQYPQTPVAMITAFGSMDLAVEALKAGAFDFVSKQVDIGVLRGLVKHALELNNRDRPAPPAPPPEQASR
LLGDSGAMEGLRATIGKVARSQAPVYIVGESGVGKELVARTIHEQGARTIHEQGARAAGPFVPVNCGAIPAELMESEFFG
HKKGSFTGAHADKPGLFQAAHGGTLFLDEVAELPLQMQVKLLRAIQEKSVRPVGASSESLVDVRILSATHKNLGDLVSDG
RFRHDLYYRINVIELRVPPLRERSGDLPQLAAAIIARLAHSHARPIPLLTQSALDALDTYGFPGNVRELENILERALALA
EDDQISASDLRLPAHGGHRLAASPGSAAIEPREAVVDIDPASAALPSYIEQLERAAIQKALEENRWNKTRTAAQLGITFR
ALRYKLKKLGME

Nucleotide


Download         Length: 1479 bp        

>NTDB_id=725843 NYR97_RS02455 WP_316696529.1 605526..607004(+) (pilR) [Xanthomonas hydrangeae strain 22-323]
GTGGGCGCAAACCCCGACGACAATTGTCGTCCGTCATCGCGCTGGGCTATCGTGCGCACCATGAGCGAACCCAAAAGTGC
CTTGGTTGTCGATGACGAGCGTGATATCCGCGAGTTGCTTGTTCTCACCCTGGGCCGGATGGGCCTGCGCATCAGCACCG
CGGCCAACCTGGCCGAAGCGCGCGAGCTGCTGGCCAACAACCCCTACGACCTCTGCCTGACCGACATGCGCCTGCCAGAC
GGCAACGGCATCGAACTGGTCACCGAAATCTCAAAACAGTATCCGCAGACCCCGGTGGCGATGATCACCGCGTTCGGCAG
CATGGACCTGGCGGTGGAAGCGCTGAAGGCTGGCGCGTTCGACTTCGTCAGCAAGCAGGTGGACATCGGCGTGCTGCGCG
GCCTGGTCAAGCACGCGCTGGAATTGAACAACCGCGACCGCCCCGCCCCACCGGCGCCGCCGCCGGAACAGGCCAGCCGC
CTGCTCGGCGACTCCGGTGCGATGGAAGGCCTGCGCGCCACCATCGGCAAGGTCGCGCGCAGCCAGGCGCCGGTCTATAT
CGTCGGCGAATCGGGCGTGGGCAAGGAACTGGTCGCACGCACCATCCATGAGCAGGGCGCACGCACCATCCATGAGCAGG
GCGCACGCGCGGCCGGCCCGTTCGTGCCGGTCAACTGCGGCGCCATTCCCGCCGAACTGATGGAAAGCGAGTTCTTCGGC
CACAAGAAGGGCAGCTTCACCGGCGCGCATGCCGACAAGCCCGGCCTGTTCCAGGCCGCGCATGGCGGCACGCTGTTCCT
GGACGAAGTGGCCGAATTGCCGCTGCAGATGCAGGTCAAGCTGCTGCGCGCGATCCAGGAAAAATCGGTGCGCCCGGTCG
GCGCCTCCAGCGAGTCGCTGGTGGACGTGCGCATCCTCTCGGCCACCCACAAGAACCTCGGCGACCTGGTCTCCGACGGT
CGTTTTCGTCACGACCTGTACTACCGCATCAACGTGATCGAACTGCGCGTCCCGCCACTGCGCGAACGCAGCGGCGACCT
GCCGCAACTGGCCGCCGCCATCATCGCGCGCCTGGCGCACAGCCACGCCCGCCCGATTCCGCTGTTGACCCAATCCGCGC
TCGACGCGCTGGACACATACGGTTTCCCCGGCAATGTCCGCGAGCTGGAAAACATACTCGAACGCGCCCTGGCCCTGGCC
GAAGACGACCAGATCAGCGCCAGCGACTTGCGCCTGCCCGCCCACGGCGGCCACCGCCTCGCCGCCAGCCCCGGCAGCGC
CGCCATCGAACCGCGCGAAGCCGTCGTCGACATCGACCCCGCCTCGGCCGCGCTGCCCTCCTACATCGAGCAACTCGAGC
GCGCCGCGATCCAGAAAGCGCTGGAAGAAAACCGCTGGAACAAGACCAGAACCGCCGCGCAGCTGGGCATCACGTTTCGG
GCGTTGCGTTACAAGTTGAAGAAGTTGGGGATGGAGTGA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(28-134)

Bacterial regulatory protein, Fis family (HTH_8)

(449-489)

Sigma-54 interaction domain (Sigma54_activat)

(162-335)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

61.966

95.122

0.589
  pilR Acinetobacter baumannii strain A118

47.881

95.935

0.459