Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilG   Type   Regulator
Locus tag   NYR97_RS01870 Genome accession   NZ_CP103836
Coordinates   456043..456444 (-) Length   133 a.a.
NCBI ID   WP_023904776.1    Uniprot ID   A0AAU0BDV7
Organism   Xanthomonas hydrangeae strain 22-323     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 451043..461444
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NYR97_RS01855 (NYR97_01850) - 453057..455093 (-) 2037 WP_316696357.1 methyl-accepting chemotaxis protein -
  NYR97_RS01860 (NYR97_01855) - 455133..455663 (-) 531 WP_316696359.1 chemotaxis protein CheW -
  NYR97_RS01865 (NYR97_01860) - 455663..456025 (-) 363 WP_006450735.1 response regulator -
  NYR97_RS01870 (NYR97_01865) pilG 456043..456444 (-) 402 WP_023904776.1 twitching motility response regulator PilG Regulator
  NYR97_RS01875 (NYR97_01870) gshB 456681..457631 (+) 951 WP_316696361.1 glutathione synthase -
  NYR97_RS01880 (NYR97_01875) - 457628..458503 (+) 876 WP_316696363.1 energy transducer TonB -
  NYR97_RS01885 - 458719..458912 (+) 194 Protein_375 hypothetical protein -
  NYR97_RS01890 (NYR97_01880) tsaB 459065..459787 (-) 723 WP_316696365.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex dimerization subunit type 1 TsaB -

Sequence

Protein


Download         Length: 133 a.a.        Molecular weight: 14690.07 Da        Isoelectric Point: 7.1350

>NTDB_id=725841 NYR97_RS01870 WP_023904776.1 456043..456444(-) (pilG) [Xanthomonas hydrangeae strain 22-323]
MSEHIAAGGELAGLKVMVIDDSKTIRRTAETLLKREGCEVVTATDGFEALAKIADQQPQIIFVDIMMPRLDGYQTCALIK
GNQLFKSTPVIMLSSKDGLFDKARGRIVGSEQYLTKPFTREELLSAIRTYVHA

Nucleotide


Download         Length: 402 bp        

>NTDB_id=725841 NYR97_RS01870 WP_023904776.1 456043..456444(-) (pilG) [Xanthomonas hydrangeae strain 22-323]
ATGAGTGAACACATTGCTGCGGGTGGGGAACTCGCAGGACTGAAGGTGATGGTCATCGACGATTCGAAGACTATTCGCCG
CACCGCCGAAACGCTGCTGAAGCGAGAAGGGTGTGAAGTAGTGACAGCAACGGACGGTTTCGAGGCACTGGCCAAAATTG
CGGACCAGCAACCTCAGATCATTTTTGTCGACATCATGATGCCGCGCCTGGATGGGTACCAGACGTGCGCGTTGATCAAG
GGCAACCAGCTCTTCAAGTCGACGCCGGTGATCATGTTGTCGTCCAAGGATGGCCTGTTCGACAAGGCACGCGGCCGCAT
CGTCGGCTCCGAGCAATATCTGACCAAGCCATTTACTCGTGAAGAACTACTGAGCGCGATTCGCACGTACGTCCACGCCT
GA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(16-128)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilG Acinetobacter baumannii strain A118

75.207

90.977

0.684