Detailed information    

insolico Bioinformatically predicted

Overview

Name   HI0659   Type   Machinery gene
Locus tag   NYR63_RS07220 Genome accession   NZ_CP103834
Coordinates   1569935..1570228 (-) Length   97 a.a.
NCBI ID   WP_279456934.1    Uniprot ID   -
Organism   Actinobacillus genomosp. 1 strain 3216     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1564935..1575228
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NYR63_RS07190 (NYR63_07185) artM 1565262..1565945 (-) 684 WP_279456929.1 arginine ABC transporter permease ArtM -
  NYR63_RS07195 (NYR63_07190) artQ 1565945..1566616 (-) 672 WP_005598470.1 arginine ABC transporter permease ArtQ -
  NYR63_RS07200 (NYR63_07195) - 1566622..1567341 (-) 720 WP_279456930.1 transporter substrate-binding domain-containing protein -
  NYR63_RS07205 (NYR63_07200) artP 1567362..1568096 (-) 735 WP_279456931.1 arginine ABC transporter ATP-binding protein ArtP -
  NYR63_RS07210 (NYR63_07205) - 1568326..1568823 (-) 498 WP_279456932.1 YbhB/YbcL family Raf kinase inhibitor-like protein -
  NYR63_RS07215 (NYR63_07210) - 1568896..1569858 (+) 963 WP_279456933.1 calcium/sodium antiporter -
  NYR63_RS07220 (NYR63_07215) HI0659 1569935..1570228 (-) 294 WP_279456934.1 helix-turn-helix domain-containing protein Machinery gene
  NYR63_RS07225 (NYR63_07220) - 1570209..1570580 (-) 372 WP_279456935.1 type II toxin-antitoxin system RelE/ParE family toxin -
  NYR63_RS07230 (NYR63_07225) - 1570782..1572530 (+) 1749 WP_279456936.1 protein-disulfide reductase DsbD -
  NYR63_RS07235 (NYR63_07230) - 1572590..1573159 (+) 570 WP_279456937.1 elongation factor P hydroxylase -
  NYR63_RS07240 (NYR63_07235) rsmI 1573203..1574057 (-) 855 WP_279456938.1 16S rRNA (cytidine(1402)-2'-O)-methyltransferase -

Sequence

Protein


Download         Length: 97 a.a.        Molecular weight: 10940.92 Da        Isoelectric Point: 10.3120

>NTDB_id=725827 NYR63_RS07220 WP_279456934.1 1569935..1570228(-) (HI0659) [Actinobacillus genomosp. 1 strain 3216]
MSPIGSSWTSFEQEIFDELEIAETQFRIRLILEIIETRQQLGISQRKLEKLSGVKQSMIARVEKGSVNPSLATVLKLLVP
LGKTLQIVPLDKPKVPR

Nucleotide


Download         Length: 294 bp        

>NTDB_id=725827 NYR63_RS07220 WP_279456934.1 1569935..1570228(-) (HI0659) [Actinobacillus genomosp. 1 strain 3216]
ATGAGCCCTATTGGTTCTAGTTGGACATCGTTTGAACAAGAAATTTTTGACGAGTTGGAAATAGCCGAAACACAATTTCG
CATACGGCTTATTTTAGAGATTATTGAAACCCGTCAGCAACTGGGGATCTCACAAAGAAAGCTGGAAAAATTAAGCGGTG
TGAAACAATCCATGATTGCGCGAGTAGAAAAAGGTTCGGTTAATCCGTCTTTGGCGACTGTATTGAAATTACTCGTTCCG
TTAGGTAAGACTTTACAAATCGTACCGCTGGATAAGCCTAAAGTACCACGTTAA

Domains

Predicted by InterproScan.

Helix-turn-helix (HTH_3)

(35-86)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  HI0659 Haemophilus influenzae Rd KW20

66.667

92.784

0.619