Detailed information    

insolico Bioinformatically predicted

Overview

Name   HI0659   Type   Machinery gene
Locus tag   NYR89_RS10695 Genome accession   NZ_CP103833
Coordinates   2223676..2223960 (-) Length   94 a.a.
NCBI ID   WP_279445789.1    Uniprot ID   -
Organism   Actinobacillus arthritidis strain CCUG24862     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2218676..2228960
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NYR89_RS10665 (NYR89_10665) artM 2219059..2219742 (-) 684 WP_279445783.1 arginine ABC transporter permease ArtM -
  NYR89_RS10670 (NYR89_10670) artQ 2219742..2220413 (-) 672 WP_279445784.1 arginine ABC transporter permease ArtQ -
  NYR89_RS10675 (NYR89_10675) - 2220419..2221138 (-) 720 WP_279445785.1 transporter substrate-binding domain-containing protein -
  NYR89_RS10680 (NYR89_10680) artP 2221158..2221892 (-) 735 WP_279445786.1 arginine ABC transporter ATP-binding protein ArtP -
  NYR89_RS10685 (NYR89_10685) - 2222089..2222586 (-) 498 WP_279445788.1 YbhB/YbcL family Raf kinase inhibitor-like protein -
  NYR89_RS10690 (NYR89_10690) - 2222660..2223621 (+) 962 Protein_2052 calcium/sodium antiporter -
  NYR89_RS10695 (NYR89_10695) HI0659 2223676..2223960 (-) 285 WP_279445789.1 helix-turn-helix transcriptional regulator Machinery gene
  NYR89_RS10700 (NYR89_10700) - 2223941..2224312 (-) 372 WP_279445790.1 type II toxin-antitoxin system RelE/ParE family toxin -
  NYR89_RS10705 (NYR89_10705) - 2224509..2226257 (+) 1749 Protein_2055 protein-disulfide reductase DsbD -
  NYR89_RS10710 (NYR89_10710) - 2226316..2226885 (+) 570 WP_279437970.1 elongation factor P hydroxylase -
  NYR89_RS10715 (NYR89_10715) rsmI 2226929..2227781 (-) 853 Protein_2057 16S rRNA (cytidine(1402)-2'-O)-methyltransferase -

Sequence

Protein


Download         Length: 94 a.a.        Molecular weight: 10435.21 Da        Isoelectric Point: 10.0168

>NTDB_id=725811 NYR89_RS10695 WP_279445789.1 2223676..2223960(-) (HI0659) [Actinobacillus arthritidis strain CCUG24862]
MSPIGSSWHSFEQQVLNPLDIEEQNFRIKLILEIIETRQALGISQRKLESLSGVKQSMIARVEKGSSNPSLATLLKLLVP
LGKTLQIVPLNADK

Nucleotide


Download         Length: 285 bp        

>NTDB_id=725811 NYR89_RS10695 WP_279445789.1 2223676..2223960(-) (HI0659) [Actinobacillus arthritidis strain CCUG24862]
ATGAGCCCTATTGGTTCTAGTTGGCATTCATTTGAACAACAAGTGTTGAATCCTTTAGACATTGAAGAACAAAATTTCCG
CATAAAACTTATTCTTGAAATTATAGAAACCCGTCAAGCACTCGGTATTTCTCAACGCAAGTTAGAAAGTTTAAGCGGCG
TAAAGCAATCAATGATTGCCCGAGTAGAAAAAGGCTCGTCCAATCCTTCTTTGGCAACACTATTAAAATTACTGGTTCCG
CTAGGTAAAACGCTACAAATCGTACCGCTGAATGCAGATAAATAA

Domains

Predicted by InterproScan.

Helix-turn-helix (HTH_3)

(35-86)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  HI0659 Haemophilus influenzae Rd KW20

65.556

95.745

0.628