Detailed information    

insolico Bioinformatically predicted

Overview

Name   HI0659   Type   Machinery gene
Locus tag   NYR87_RS10835 Genome accession   NZ_CP103831
Coordinates   2323292..2323582 (+) Length   96 a.a.
NCBI ID   WP_039198813.1    Uniprot ID   -
Organism   Actinobacillus equuli subsp. haemolyticus strain 1812     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2318292..2328582
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NYR87_RS10815 (NYR87_10810) rsmI 2319447..2320301 (+) 855 WP_279437193.1 16S rRNA (cytidine(1402)-2'-O)-methyltransferase -
  NYR87_RS10820 (NYR87_10815) - 2320345..2320914 (-) 570 WP_039198809.1 elongation factor P hydroxylase -
  NYR87_RS10825 (NYR87_10820) - 2320974..2322722 (-) 1749 WP_279481014.1 protein-disulfide reductase DsbD -
  NYR87_RS10830 (NYR87_10825) - 2322940..2323311 (+) 372 WP_005621659.1 type II toxin-antitoxin system RelE/ParE family toxin -
  NYR87_RS10835 (NYR87_10830) HI0659 2323292..2323582 (+) 291 WP_039198813.1 helix-turn-helix transcriptional regulator Machinery gene
  NYR87_RS10840 (NYR87_10835) - 2323650..2324612 (-) 963 WP_039198815.1 calcium/sodium antiporter -
  NYR87_RS10845 (NYR87_10840) - 2324685..2325182 (+) 498 WP_279481016.1 YbhB/YbcL family Raf kinase inhibitor-like protein -
  NYR87_RS10850 (NYR87_10845) artP 2325406..2326140 (+) 735 WP_279438545.1 arginine ABC transporter ATP-binding protein ArtP -
  NYR87_RS10855 (NYR87_10850) - 2326161..2326880 (+) 720 WP_279481020.1 transporter substrate-binding domain-containing protein -
  NYR87_RS10860 (NYR87_10855) artQ 2326886..2327557 (+) 672 WP_279481023.1 arginine ABC transporter permease ArtQ -
  NYR87_RS10865 (NYR87_10860) artM 2327557..2328240 (+) 684 WP_279443240.1 arginine ABC transporter permease ArtM -

Sequence

Protein


Download         Length: 96 a.a.        Molecular weight: 10821.59 Da        Isoelectric Point: 8.7275

>NTDB_id=725788 NYR87_RS10835 WP_039198813.1 2323292..2323582(+) (HI0659) [Actinobacillus equuli subsp. haemolyticus strain 1812]
MSPIGSSWTSFEREVFNELEMEENHFRVKLILEIIETRQALGISQRKLEKLSGVKQSMIARIEKGSSNPSLGTLLKLLVP
LGKTLQIVSLDETHSK

Nucleotide


Download         Length: 291 bp        

>NTDB_id=725788 NYR87_RS10835 WP_039198813.1 2323292..2323582(+) (HI0659) [Actinobacillus equuli subsp. haemolyticus strain 1812]
ATGAGCCCCATTGGTTCTAGTTGGACATCATTTGAACGAGAGGTGTTTAATGAGTTGGAAATGGAAGAAAACCATTTTCG
TGTTAAATTGATTCTTGAAATCATTGAAACCCGACAAGCACTAGGCATTTCACAGCGTAAATTAGAAAAACTAAGCGGCG
TTAAACAATCTATGATTGCTCGCATTGAAAAGGGAAGTTCCAATCCTTCTCTTGGTACGTTACTGAAGTTACTGGTGCCT
TTGGGGAAAACATTACAAATTGTCTCTTTAGACGAAACTCATTCTAAATAA

Domains

Predicted by InterproScan.

Helix-turn-helix (HTH_3)

(35-86)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  HI0659 Haemophilus influenzae Rd KW20

65.556

93.75

0.615