Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA/comE1   Type   Machinery gene
Locus tag   NYR86_RS10125 Genome accession   NZ_CP103830
Coordinates   2206989..2207351 (-) Length   120 a.a.
NCBI ID   WP_275218340.1    Uniprot ID   -
Organism   Actinobacillus equuli subsp. equuli strain 2499     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2201989..2212351
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NYR86_RS10110 (NYR86_10110) - 2202783..2203403 (+) 621 WP_015674354.1 MerR family transcriptional regulator -
  NYR86_RS10115 (NYR86_10115) gshAB 2203495..2205768 (-) 2274 WP_279623248.1 bifunctional glutamate--cysteine ligase GshA/glutathione synthetase GshB -
  NYR86_RS10120 (NYR86_10120) asd 2205920..2206813 (-) 894 WP_278226642.1 archaetidylserine decarboxylase -
  NYR86_RS10125 (NYR86_10125) comEA/comE1 2206989..2207351 (-) 363 WP_275218340.1 ComEA family DNA-binding protein Machinery gene
  NYR86_RS10130 (NYR86_10130) - 2207680..2209056 (+) 1377 WP_279623249.1 LysM-like peptidoglycan-binding domain-containing protein -
  NYR86_RS10135 (NYR86_10135) - 2209130..2209585 (+) 456 WP_279453398.1 MliC family protein -
  NYR86_RS10140 (NYR86_10140) waaF 2209668..2210705 (+) 1038 WP_279623250.1 lipopolysaccharide heptosyltransferase II -
  NYR86_RS10145 (NYR86_10145) rfaC 2210781..2211740 (+) 960 WP_279623251.1 lipopolysaccharide heptosyltransferase RfaC -
  NYR86_RS10150 (NYR86_10150) rpsL 2211864..2212238 (+) 375 WP_005543325.1 30S ribosomal protein S12 -

Sequence

Protein


Download         Length: 120 a.a.        Molecular weight: 12784.62 Da        Isoelectric Point: 10.0523

>NTDB_id=725761 NYR86_RS10125 WP_275218340.1 2206989..2207351(-) (comEA/comE1) [Actinobacillus equuli subsp. equuli strain 2499]
MKTRSKFGLSLLIGMLSTGTFAAEKVKPTDTEPTPVVQNAQAVTGHNHAEMMTNANLVNINTATAAEIQDKLVGIGAKKA
QAIVEYRTKNGAFSSLEQLTDVSGIGKATLDKNRDRIALQ

Nucleotide


Download         Length: 363 bp        

>NTDB_id=725761 NYR86_RS10125 WP_275218340.1 2206989..2207351(-) (comEA/comE1) [Actinobacillus equuli subsp. equuli strain 2499]
ATGAAAACACGTTCAAAATTTGGTCTAAGTTTATTAATCGGTATGTTATCTACCGGTACGTTTGCAGCTGAAAAAGTAAA
GCCTACCGACACAGAACCTACTCCTGTAGTTCAAAACGCACAAGCAGTCACAGGGCATAACCATGCCGAAATGATGACCA
ATGCAAACTTAGTGAACATTAACACAGCGACCGCCGCTGAAATCCAAGATAAATTGGTTGGTATTGGCGCTAAAAAAGCA
CAAGCGATAGTTGAATATCGTACGAAAAATGGCGCGTTTAGCAGTTTGGAACAACTTACCGATGTATCTGGCATAGGTAA
AGCTACGCTTGATAAAAATCGTGATCGCATTGCATTACAATAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(54-117)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA/comE1 Glaesserella parasuis strain SC1401

64.167

100

0.642