Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   NYR86_RS08555 Genome accession   NZ_CP103830
Coordinates   1893936..1894571 (+) Length   211 a.a.
NCBI ID   WP_279623158.1    Uniprot ID   -
Organism   Actinobacillus equuli subsp. equuli strain 2499     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 1888936..1899571
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NYR86_RS08510 (NYR86_08510) rplP 1889002..1889412 (-) 411 WP_005625160.1 50S ribosomal protein L16 -
  NYR86_RS08515 (NYR86_08515) rpsC 1889426..1890130 (-) 705 WP_014992367.1 30S ribosomal protein S3 -
  NYR86_RS08520 (NYR86_08520) rplV 1890149..1890481 (-) 333 WP_005599292.1 50S ribosomal protein L22 -
  NYR86_RS08525 (NYR86_08525) rpsS 1890492..1890767 (-) 276 WP_005539416.1 30S ribosomal protein S19 -
  NYR86_RS08530 (NYR86_08530) rplB 1890795..1891616 (-) 822 WP_014992368.1 50S ribosomal protein L2 -
  NYR86_RS08535 (NYR86_08535) rplW 1891637..1891942 (-) 306 WP_005599290.1 50S ribosomal protein L23 -
  NYR86_RS08540 (NYR86_08540) rplD 1891939..1892541 (-) 603 WP_005599282.1 50S ribosomal protein L4 -
  NYR86_RS08545 (NYR86_08545) rplC 1892557..1893183 (-) 627 WP_014992369.1 50S ribosomal protein L3 -
  NYR86_RS08550 (NYR86_08550) rpsJ 1893209..1893520 (-) 312 WP_001181005.1 30S ribosomal protein S10 -
  NYR86_RS08555 (NYR86_08555) sxy/tfoX 1893936..1894571 (+) 636 WP_279623158.1 TfoX/Sxy family DNA transformation protein Regulator
  NYR86_RS08560 (NYR86_08560) rpsT 1894630..1894893 (-) 264 WP_005619152.1 30S ribosomal protein S20 -
  NYR86_RS08565 (NYR86_08565) murJ 1895300..1896868 (+) 1569 WP_279623159.1 murein biosynthesis integral membrane protein MurJ -
  NYR86_RS08570 (NYR86_08570) - 1896889..1897956 (+) 1068 WP_279623160.1 MFS transporter -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 24607.71 Da        Isoelectric Point: 9.6735

>NTDB_id=725755 NYR86_RS08555 WP_279623158.1 1893936..1894571(+) (sxy/tfoX) [Actinobacillus equuli subsp. equuli strain 2499]
MKYTAEELEKLKALLSPLGEVAFKPYFSFLGIFKDDTMFALYKNQQLYVRKSVQYLEEIAQTISIHFLVDRHISNRSKIF
YHLPPSILNNLQTYSHWISSAILEYQQSKAKIENQNQNKIRMLPNLNVSIERLLAKVGIYTVTDLKTVGAINVFVRLIQQ
GLEATALLLFKLYSAIQYKYIYMLTEQEKQDLLIEADNTLYQAGLRKRFIP

Nucleotide


Download         Length: 636 bp        

>NTDB_id=725755 NYR86_RS08555 WP_279623158.1 1893936..1894571(+) (sxy/tfoX) [Actinobacillus equuli subsp. equuli strain 2499]
ATGAAATACACAGCAGAGGAGCTAGAAAAACTTAAAGCATTATTATCCCCTCTCGGGGAGGTCGCCTTTAAGCCTTATTT
TTCATTCTTAGGTATCTTTAAAGACGATACCATGTTTGCTCTCTACAAAAATCAACAGTTATACGTACGCAAATCGGTTC
AATACTTAGAGGAAATAGCTCAAACGATATCTATTCACTTTCTAGTTGATCGCCATATCAGCAATCGTTCTAAAATCTTT
TATCATCTTCCTCCTTCCATCCTCAATAATCTGCAAACTTATTCCCACTGGATATCCTCAGCTATTCTCGAATATCAACA
GTCTAAAGCAAAAATCGAAAACCAAAATCAGAATAAAATTCGTATGTTGCCAAACTTAAATGTCAGTATTGAGAGATTAC
TGGCTAAAGTCGGTATTTATACGGTAACAGATTTAAAAACGGTAGGTGCAATTAACGTTTTCGTACGTTTAATCCAACAA
GGTTTGGAAGCAACCGCATTGTTATTATTTAAACTATATAGTGCGATTCAATATAAATATATTTATATGCTGACAGAACA
AGAAAAACAGGATTTACTGATTGAAGCCGACAATACGCTTTATCAAGCTGGATTACGGAAAAGATTCATACCGTGA

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(117-193)

TfoX N-terminal domain (TfoX_N)

(14-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Actinobacillus suis H91-0380

90

99.526

0.896
  sxy/tfoX Actinobacillus pleuropneumoniae strain HS143

63.679

100

0.64
  sxy/tfoX Glaesserella parasuis strain SC1401

40.952

99.526

0.408