Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoN/rpoN1   Type   Machinery gene
Locus tag   PY372_RS13755 Genome accession   NZ_CP119301
Coordinates   2922822..2924288 (+) Length   488 a.a.
NCBI ID   WP_005484866.1    Uniprot ID   -
Organism   Vibrio parahaemolyticus strain LC     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2917822..2929288
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PY372_RS13730 (PY372_13900) - 2918942..2919907 (+) 966 WP_005455122.1 calcium/sodium antiporter -
  PY372_RS13735 (PY372_13905) kdsD 2919944..2920915 (+) 972 WP_020841311.1 arabinose-5-phosphate isomerase KdsD -
  PY372_RS13740 (PY372_13910) lptC 2921006..2921569 (+) 564 WP_005467805.1 LPS export ABC transporter periplasmic protein LptC -
  PY372_RS13745 (PY372_13915) lptA 2921550..2922044 (+) 495 WP_005467803.1 lipopolysaccharide transport periplasmic protein LptA -
  PY372_RS13750 (PY372_13920) lptB 2922046..2922771 (+) 726 WP_323709920.1 LPS export ABC transporter ATP-binding protein -
  PY372_RS13755 (PY372_13925) rpoN/rpoN1 2922822..2924288 (+) 1467 WP_005484866.1 RNA polymerase factor sigma-54 Machinery gene
  PY372_RS13760 (PY372_13930) hpf 2924313..2924600 (+) 288 WP_005467451.1 ribosome hibernation promoting factor -
  PY372_RS13765 (PY372_13935) ptsN 2924603..2925049 (+) 447 WP_005467453.1 PTS IIA-like nitrogen regulatory protein PtsN -
  PY372_RS13770 (PY372_13940) rapZ 2925064..2925927 (+) 864 WP_005468663.1 RNase adapter RapZ -
  PY372_RS13775 (PY372_13945) - 2925930..2926205 (+) 276 WP_005468661.1 HPr family phosphocarrier protein -
  PY372_RS13780 (PY372_13950) mgtE 2926425..2927780 (+) 1356 WP_005468659.1 magnesium transporter -
  PY372_RS13785 (PY372_13955) pmbA 2927857..2929200 (-) 1344 WP_062851420.1 metalloprotease PmbA -

Sequence

Protein


Download         Length: 488 a.a.        Molecular weight: 54838.66 Da        Isoelectric Point: 4.3441

>NTDB_id=725723 PY372_RS13755 WP_005484866.1 2922822..2924288(+) (rpoN/rpoN1) [Vibrio parahaemolyticus strain LC]
MKPSLQLKLGQQLAMTPQLQQAIRLLQLSTLDLQQEIQEALDSNPLLEVEEGHEEPQANGEDKSALETADNSANEPTEIE
VPDSSDVIEKSEISSELEIDTTWDDVYSANTGSTGLALDDDMPVYQGETTESLHDYLMWQLDLTPFSETDRTIAIAIIDA
IDDYGYLTLSPEEIHESFDNEDIELDEVEAVRKRIQQFDPLGVASRNLQECLLLQLATFPEDTPWLAEAKMILADHIDHL
GNRDYKLVIKETKLKEADLREVLKLIQQLDPRPGSRITPDDTEYVIPDVSVFKDHGKWTVSINPDSIPKLKVNQQYAQLG
KGNSADSQYIRSNLQEAKWLIKSLESRNETLLKVARCIVEHQQDFFEYGEEAMKPMVLNDVALAVDMHESTISRVTTQKF
MHTPRGIFELKYFFSSHVSTDNGGECSSTAIRALIKKLVAAENTAKPLSDSKIAALLADQGIQVARRTIAKYRESLGIAP
SSQRKRLL

Nucleotide


Download         Length: 1467 bp        

>NTDB_id=725723 PY372_RS13755 WP_005484866.1 2922822..2924288(+) (rpoN/rpoN1) [Vibrio parahaemolyticus strain LC]
ATGAAACCTTCATTACAACTCAAGCTAGGTCAACAGTTAGCCATGACGCCACAGTTGCAACAAGCAATTCGCTTGCTGCA
GTTGTCGACTCTCGATCTTCAACAAGAAATCCAAGAAGCGTTGGACTCAAACCCGCTATTGGAAGTTGAAGAAGGCCACG
AAGAACCTCAAGCAAATGGTGAAGACAAATCAGCACTCGAAACTGCTGACAACAGTGCCAACGAGCCAACAGAAATCGAA
GTTCCTGATAGTTCTGACGTCATCGAAAAATCCGAAATCAGCTCAGAGCTTGAAATCGACACAACTTGGGATGATGTCTA
CAGCGCAAATACGGGCAGTACCGGTTTAGCGTTAGACGATGATATGCCGGTCTACCAAGGCGAAACCACAGAATCGCTAC
ACGATTACCTGATGTGGCAACTCGACTTAACGCCTTTCAGTGAAACCGACCGTACGATTGCCATTGCCATCATTGATGCG
ATTGACGATTACGGCTATCTGACCCTATCTCCTGAAGAGATTCACGAAAGCTTCGACAACGAAGATATTGAGTTGGATGA
AGTCGAAGCCGTGCGCAAACGCATCCAACAGTTTGACCCGCTTGGTGTGGCATCGCGGAACCTGCAAGAATGCTTACTCC
TGCAACTTGCAACCTTCCCAGAAGACACGCCTTGGCTTGCAGAAGCCAAAATGATTCTTGCCGATCACATCGATCACCTT
GGTAATCGCGATTACAAACTGGTCATCAAAGAAACTAAGCTAAAAGAAGCGGATCTACGCGAAGTATTAAAACTGATCCA
ACAGTTAGATCCTCGTCCGGGCAGTCGCATTACCCCAGACGACACAGAATACGTCATTCCGGATGTATCAGTATTTAAAG
ATCATGGAAAGTGGACCGTTTCCATCAACCCTGACAGCATTCCAAAGTTAAAAGTTAACCAACAATACGCTCAATTAGGC
AAAGGCAACAGTGCGGATAGCCAGTACATTCGCAGCAATTTGCAAGAGGCAAAATGGTTAATTAAGAGCTTAGAGAGCAG
AAACGAGACGCTACTCAAAGTTGCAAGATGTATTGTTGAACATCAACAAGATTTCTTCGAGTATGGTGAAGAAGCCATGA
AGCCAATGGTACTCAATGATGTAGCCTTGGCGGTGGACATGCATGAATCCACAATATCTCGTGTTACGACACAAAAGTTC
ATGCATACGCCACGTGGCATTTTTGAATTGAAGTACTTCTTCTCCAGCCACGTCAGTACAGACAATGGCGGAGAATGTTC
GTCAACAGCAATCCGCGCACTCATTAAGAAACTGGTCGCGGCAGAGAATACTGCTAAACCACTTAGTGACAGTAAGATTG
CTGCTCTTCTGGCTGACCAAGGGATTCAGGTCGCAAGACGTACGATAGCTAAATATCGAGAATCCTTGGGTATTGCCCCT
TCAAGTCAGCGTAAACGCCTACTTTAA

Domains

Predicted by InterProScan.

Sigma-54, DNA binding domain (Sigma54_DBD)

(328-486)

Sigma-54 factor, core binding domain (Sigma54_CBD)

(129-316)

Sigma-54 factor, Activator interacting domain (AID) (Sigma54_AID)

(4-49)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoN/rpoN1 Ralstonia pseudosolanacearum GMI1000

44.444

100

0.459