Detailed information    

insolico Bioinformatically predicted

Overview

Name   HI0659   Type   Machinery gene
Locus tag   NYR83_RS10565 Genome accession   NZ_CP103828
Coordinates   2287186..2287476 (+) Length   96 a.a.
NCBI ID   WP_039198813.1    Uniprot ID   -
Organism   Actinobacillus equuli subsp. equuli strain 3009     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2282186..2292476
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NYR83_RS10545 (NYR83_10545) rsmI 2283342..2284196 (+) 855 WP_039198806.1 16S rRNA (cytidine(1402)-2'-O)-methyltransferase -
  NYR83_RS10550 (NYR83_10550) - 2284240..2284809 (-) 570 WP_039198809.1 elongation factor P hydroxylase -
  NYR83_RS10555 (NYR83_10555) - 2284868..2286616 (-) 1749 WP_279443238.1 protein-disulfide reductase DsbD -
  NYR83_RS10560 (NYR83_10560) - 2286834..2287205 (+) 372 WP_005621659.1 type II toxin-antitoxin system RelE/ParE family toxin -
  NYR83_RS10565 (NYR83_10565) HI0659 2287186..2287476 (+) 291 WP_039198813.1 helix-turn-helix transcriptional regulator Machinery gene
  NYR83_RS10570 (NYR83_10570) - 2287544..2288506 (-) 963 WP_039198815.1 calcium/sodium antiporter -
  NYR83_RS10575 (NYR83_10575) - 2288579..2289076 (+) 498 WP_039198817.1 YbhB/YbcL family Raf kinase inhibitor-like protein -
  NYR83_RS10580 (NYR83_10580) artP 2289301..2290035 (+) 735 WP_039198820.1 arginine ABC transporter ATP-binding protein ArtP -
  NYR83_RS10585 (NYR83_10585) - 2290055..2290774 (+) 720 WP_279443239.1 transporter substrate-binding domain-containing protein -
  NYR83_RS10590 (NYR83_10590) artQ 2290780..2291451 (+) 672 WP_278226783.1 arginine ABC transporter permease ArtQ -
  NYR83_RS10595 (NYR83_10595) artM 2291451..2292134 (+) 684 WP_279443240.1 arginine ABC transporter permease ArtM -

Sequence

Protein


Download         Length: 96 a.a.        Molecular weight: 10821.59 Da        Isoelectric Point: 8.7275

>NTDB_id=725709 NYR83_RS10565 WP_039198813.1 2287186..2287476(+) (HI0659) [Actinobacillus equuli subsp. equuli strain 3009]
MSPIGSSWTSFEREVFNELEMEENHFRVKLILEIIETRQALGISQRKLEKLSGVKQSMIARIEKGSSNPSLGTLLKLLVP
LGKTLQIVSLDETHSK

Nucleotide


Download         Length: 291 bp        

>NTDB_id=725709 NYR83_RS10565 WP_039198813.1 2287186..2287476(+) (HI0659) [Actinobacillus equuli subsp. equuli strain 3009]
ATGAGCCCCATTGGTTCTAGTTGGACATCATTTGAACGAGAGGTGTTTAATGAGTTGGAAATGGAAGAAAACCATTTCCG
CGTTAAATTAATTCTTGAAATCATTGAAACCCGACAAGCACTAGGCATTTCACAGCGTAAATTAGAAAAACTAAGCGGCG
TTAAACAATCTATGATTGCTCGCATTGAAAAGGGAAGTTCCAATCCTTCTCTTGGTACGTTACTGAAGTTACTGGTGCCT
TTGGGGAAAACATTACAAATTGTCTCTTTAGACGAAACTCATTCTAAATAA

Domains

Predicted by InterproScan.

Helix-turn-helix (HTH_3)

(35-86)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  HI0659 Haemophilus influenzae Rd KW20

65.556

93.75

0.615