Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA/comE1   Type   Machinery gene
Locus tag   NYR83_RS09925 Genome accession   NZ_CP103828
Coordinates   2154593..2154955 (-) Length   120 a.a.
NCBI ID   WP_275218340.1    Uniprot ID   -
Organism   Actinobacillus equuli subsp. equuli strain 3009     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2149593..2159955
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NYR83_RS09910 (NYR83_09910) - 2150387..2151007 (+) 621 WP_015674354.1 MerR family transcriptional regulator -
  NYR83_RS09915 (NYR83_09915) gshAB 2151099..2153372 (-) 2274 WP_279443182.1 bifunctional glutamate--cysteine ligase GshA/glutathione synthetase GshB -
  NYR83_RS09920 (NYR83_09920) asd 2153524..2154417 (-) 894 WP_278226642.1 archaetidylserine decarboxylase -
  NYR83_RS09925 (NYR83_09925) comEA/comE1 2154593..2154955 (-) 363 WP_275218340.1 ComEA family DNA-binding protein Machinery gene
  NYR83_RS09930 (NYR83_09930) - 2155284..2156657 (+) 1374 WP_279443183.1 LysM-like peptidoglycan-binding domain-containing protein -
  NYR83_RS09935 (NYR83_09935) - 2156731..2157186 (+) 456 WP_275218342.1 MliC family protein -
  NYR83_RS09940 (NYR83_09940) waaF 2157269..2158306 (+) 1038 WP_279443184.1 lipopolysaccharide heptosyltransferase II -
  NYR83_RS09945 (NYR83_09945) rfaC 2158382..2159341 (+) 960 WP_279443788.1 lipopolysaccharide heptosyltransferase RfaC -
  NYR83_RS09950 (NYR83_09950) rpsL 2159465..2159839 (+) 375 WP_005543325.1 30S ribosomal protein S12 -

Sequence

Protein


Download         Length: 120 a.a.        Molecular weight: 12784.62 Da        Isoelectric Point: 10.0523

>NTDB_id=725708 NYR83_RS09925 WP_275218340.1 2154593..2154955(-) (comEA/comE1) [Actinobacillus equuli subsp. equuli strain 3009]
MKTRSKFGLSLLIGMLSTGTFAAEKVKPTDTEPTPVVQNAQAVTGHNHAEMMTNANLVNINTATAAEIQDKLVGIGAKKA
QAIVEYRTKNGAFSSLEQLTDVSGIGKATLDKNRDRIALQ

Nucleotide


Download         Length: 363 bp        

>NTDB_id=725708 NYR83_RS09925 WP_275218340.1 2154593..2154955(-) (comEA/comE1) [Actinobacillus equuli subsp. equuli strain 3009]
ATGAAAACACGTTCAAAATTTGGTCTAAGTTTATTAATCGGTATGTTATCTACCGGTACGTTTGCAGCTGAAAAAGTAAA
GCCTACCGACACAGAACCTACTCCTGTAGTTCAAAACGCACAAGCAGTCACAGGGCATAACCATGCCGAAATGATGACCA
ATGCAAACTTAGTGAACATTAACACAGCGACCGCCGCTGAAATCCAAGATAAATTGGTTGGTATTGGCGCTAAAAAAGCA
CAAGCGATAGTTGAATATCGTACGAAAAATGGCGCGTTTAGCAGTTTGGAACAACTTACCGATGTATCTGGCATAGGTAA
AGCTACGCTTGATAAAAATCGTGATCGCATTGCATTACAATAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(54-117)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA/comE1 Glaesserella parasuis strain SC1401

64.167

100

0.642