Detailed information    

insolico Bioinformatically predicted

Overview

Name   tfoS   Type   Regulator
Locus tag   PY372_RS04130 Genome accession   NZ_CP119301
Coordinates   875530..878901 (+) Length   1123 a.a.
NCBI ID   WP_323710034.1    Uniprot ID   -
Organism   Vibrio parahaemolyticus strain LC     
Function   chitin sensor (predicted from homology)   
Competence regulation

Genomic Context

Location: 870530..883901
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PY372_RS04105 (PY372_04105) sucC 870620..871786 (+) 1167 WP_005496074.1 ADP-forming succinate--CoA ligase subunit beta -
  PY372_RS04110 (PY372_04110) sucD 871786..872658 (+) 873 WP_005486020.1 succinate--CoA ligase subunit alpha -
  PY372_RS04115 (PY372_04115) znuB 872796..873581 (-) 786 WP_005455500.1 zinc ABC transporter permease subunit ZnuB -
  PY372_RS04120 (PY372_04120) znuC 873574..874362 (-) 789 WP_062852363.1 zinc ABC transporter ATP-binding protein ZnuC -
  PY372_RS04125 (PY372_04125) znuA 874441..875319 (+) 879 WP_062852364.1 zinc ABC transporter substrate-binding protein ZnuA -
  PY372_RS04130 (PY372_04130) tfoS 875530..878901 (+) 3372 WP_323710034.1 helix-turn-helix domain-containing protein Regulator
  PY372_RS04135 (PY372_04135) - 879783..880010 (+) 228 WP_005455496.1 ferrous iron transport protein A -
  PY372_RS04140 (PY372_04140) feoB 880010..882286 (+) 2277 WP_005486014.1 Fe(2+) transporter permease subunit FeoB -
  PY372_RS04145 (PY372_04145) - 882283..882513 (+) 231 WP_005496063.1 FeoC-like transcriptional regulator -
  PY372_RS04150 (PY372_04150) - 882632..883060 (-) 429 WP_005455485.1 HIT family protein -

Sequence

Protein


Download         Length: 1123 a.a.        Molecular weight: 126729.25 Da        Isoelectric Point: 5.7195

>NTDB_id=725675 PY372_RS04130 WP_323710034.1 875530..878901(+) (tfoS) [Vibrio parahaemolyticus strain LC]
MLRQLVLIFWGLFISSHAFALNNANAIFYPLPTQVKGTFIAAKKLFLGEQGGLWIHDVHGRVLFYDGQNVLPKSGSFLQT
TAKQLAYHQGSFWTFVENEVYQTYPNKERQLVFSLNPGAQIRKIGSSGDYIWVSDGAHFYTYNIKTNELDSFSLLQLYQH
SNNSYVYINDAILVETKWALATTSGVYLSEGNKFDHVISSGQNYIEKVYYSHTRREILVGTLKGALIFNIYEPNKEIVKI
GGSHVLTFSETNQEYWVGTEHGLYLYSFLTGEVTEVEPASFLELELDSTKIYSLLSDNMGGMWIATNQGIRYYSLFSKKF
ERVTFSSYDSQTLSGRIRQTVTGPDGVLWFADDRKLYRSGAEGIVKVLELDSQINEFAFQRGMLWLATSKGLEIFQLEGL
KKVSFPYLQVMAGHAVEHIALDDTNRLWVSSGYQLYNVDIDKQSVRNFGGEWIVSQYLPAKVTRLYDTEDKLFIGTDHGI
YEYDDERIRFNRFSEKYGESLDIVTAADGSQWFASSYGLFKTVAGGEAKQVLEMSVANARPACLISDAKGVWLASSVGLS
YYRLSGELVKHYSSASGLINNEFIPGICSVVKRTEDGERELVLGSKYGLVKAEASKLLVSNPPESRFIVSQVMLENDVIQ
VGSSDLDGIKLPYGSSLSFLFGIMPKPDSQNLYYRLNEDDRWQTLEGGQLTLEHLNSGEYHLQVSNESQVTAGVVGLESR
FEVLKPWYLSQLAILGFLVSISTLIGLIMYWRSRYVMQANRELAAQVTLKTNQLRHQSRVLLTSNQQLRKQIQVRNLLVD
HVAQSIKTSVDYISSKLPVERDSITEDHVSKTYWQLNELKSAPGDASNGSQNYNLSQITQSVVDVWRDDFAKAGISVELE
DENKSSRIALESFNLDVIFNSIFANIIKRSFRGQAVKVMLEEGRDIVSLSFLDYGTQLPNKLSLSRPANNNVDMSIDNLS
QLVTVSGGHLAVFTSDAQNKIEITWPMAKELSHVEEVLPEFVPENIAEEKASPENEWLQKVYQLVAEHYHDPDFGTATAA
KMLFMSERSLQRRFKSASSRTLKDYLTEVRLETACEQLLAGEKISDVAFNCGFNDPSYFSQKFKLHFGLPPSKFAMEQNS
HAN

Nucleotide


Download         Length: 3372 bp        

>NTDB_id=725675 PY372_RS04130 WP_323710034.1 875530..878901(+) (tfoS) [Vibrio parahaemolyticus strain LC]
TTGCTTCGCCAACTTGTCCTGATTTTCTGGGGACTCTTCATATCATCTCACGCATTTGCGCTGAACAACGCAAATGCCAT
CTTTTACCCTTTGCCTACTCAGGTTAAGGGCACTTTTATTGCTGCGAAAAAATTGTTCTTGGGCGAGCAAGGTGGGCTAT
GGATTCATGATGTACATGGCCGCGTTCTTTTTTATGACGGCCAGAATGTTCTGCCAAAATCAGGCAGTTTTTTGCAAACG
ACTGCAAAGCAGCTAGCGTATCATCAAGGGTCATTCTGGACCTTTGTCGAAAATGAGGTTTATCAGACCTACCCAAACAA
AGAAAGGCAGTTGGTCTTTAGCCTTAACCCCGGGGCGCAAATTAGAAAAATAGGTTCATCAGGTGATTATATTTGGGTAA
GTGATGGCGCACATTTTTATACCTACAACATCAAAACCAATGAACTTGATTCATTTTCACTGCTTCAACTTTATCAACAT
AGCAATAATAGTTATGTGTACATCAATGATGCGATTCTGGTCGAAACCAAATGGGCGTTGGCTACAACATCTGGTGTCTA
TCTCTCTGAAGGTAATAAATTTGATCATGTGATTTCATCCGGTCAAAACTACATTGAAAAAGTGTACTACTCGCATACGA
GACGCGAGATATTGGTCGGCACCTTAAAAGGCGCGTTGATCTTCAATATTTACGAGCCGAACAAAGAGATCGTCAAAATT
GGCGGCTCCCACGTACTGACGTTTTCAGAGACCAATCAAGAGTATTGGGTTGGTACTGAGCACGGTTTGTATCTCTACTC
GTTTTTAACAGGTGAAGTTACTGAAGTTGAGCCTGCGAGCTTCTTAGAGTTAGAGCTCGATAGCACTAAAATTTATTCCT
TACTTAGCGACAACATGGGCGGAATGTGGATAGCGACCAACCAAGGCATTCGTTATTACTCTTTGTTCAGCAAAAAATTT
GAGCGAGTCACCTTTAGTAGTTATGACTCGCAAACCTTATCTGGTCGTATCAGGCAAACGGTAACAGGGCCAGATGGTGT
GCTTTGGTTTGCCGATGACCGCAAACTGTATCGTTCTGGCGCGGAAGGGATTGTAAAAGTCTTAGAATTAGATTCTCAAA
TTAACGAATTTGCGTTCCAACGAGGCATGTTATGGCTTGCCACTTCAAAAGGTTTGGAGATATTCCAATTGGAGGGGCTG
AAAAAGGTTAGCTTCCCTTATTTACAAGTAATGGCTGGGCATGCTGTTGAGCATATTGCTCTAGACGACACAAACCGTTT
GTGGGTATCCAGCGGTTACCAACTTTACAACGTTGATATCGACAAGCAATCCGTCAGAAACTTTGGTGGCGAATGGATCG
TGAGTCAGTACTTACCAGCTAAAGTGACGCGCCTATATGATACCGAAGATAAGCTTTTTATTGGTACGGACCACGGCATT
TACGAATACGATGATGAACGTATTCGTTTCAATCGTTTCTCGGAAAAATATGGCGAGTCGCTAGATATAGTGACAGCGGC
GGATGGCTCTCAGTGGTTTGCCTCTTCCTATGGGTTGTTTAAAACAGTGGCTGGTGGCGAAGCCAAGCAAGTCTTGGAGA
TGAGTGTTGCGAATGCTCGTCCGGCGTGTTTGATTAGTGATGCGAAAGGTGTGTGGCTCGCATCTTCTGTTGGGTTGAGT
TACTACCGATTGTCCGGTGAGTTAGTTAAACATTATTCATCTGCATCGGGCTTGATTAATAATGAGTTTATTCCTGGGAT
ATGTAGCGTAGTGAAACGCACAGAAGATGGTGAACGTGAACTTGTTTTAGGCTCAAAATATGGATTAGTTAAAGCAGAGG
CTTCAAAACTATTGGTGTCAAACCCGCCAGAATCCCGCTTTATTGTTAGCCAAGTGATGCTTGAAAACGATGTAATCCAA
GTGGGGAGTTCCGACCTTGATGGGATTAAGCTGCCTTATGGTTCTTCGCTGAGTTTTCTCTTTGGCATCATGCCTAAACC
GGATAGCCAGAACCTGTACTACCGCTTAAACGAAGACGATCGATGGCAGACCTTAGAAGGGGGTCAGTTAACCTTAGAGC
ACCTCAACTCTGGGGAATACCACCTTCAAGTGAGTAACGAGTCACAGGTAACGGCGGGCGTTGTTGGTTTAGAGTCTCGT
TTTGAAGTGCTCAAACCATGGTATCTATCCCAGCTTGCGATATTAGGCTTTCTCGTCTCAATTTCTACGCTTATCGGCCT
TATCATGTACTGGCGTTCACGATATGTTATGCAAGCAAACCGAGAGCTTGCTGCTCAGGTCACTCTAAAGACCAACCAAC
TAAGGCATCAAAGCCGCGTATTATTGACGAGTAACCAACAGTTAAGAAAGCAAATTCAGGTTAGAAATCTATTAGTTGAC
CATGTTGCTCAGTCTATAAAAACCAGCGTCGATTATATCTCGTCAAAATTGCCAGTGGAGAGAGACTCCATCACAGAGGA
TCACGTATCAAAAACTTACTGGCAGCTGAATGAGCTTAAAAGTGCTCCTGGTGATGCGAGTAACGGCAGTCAAAACTACA
ACCTAAGCCAAATTACGCAATCTGTGGTGGATGTGTGGCGAGACGATTTCGCCAAAGCGGGGATCTCTGTGGAGTTAGAG
GATGAGAACAAGTCTAGCCGTATTGCTCTAGAGAGTTTTAATCTGGACGTTATCTTCAACAGTATCTTTGCCAACATCAT
CAAGCGCTCTTTCCGAGGTCAAGCCGTTAAAGTGATGTTAGAAGAGGGGCGGGACATTGTCTCACTCAGCTTTTTGGATT
ACGGAACGCAATTGCCAAATAAACTTTCTCTAAGTCGTCCTGCTAATAACAATGTGGACATGAGTATAGACAATCTTTCG
CAGTTGGTTACGGTGAGTGGAGGGCACTTAGCGGTGTTCACTTCTGATGCGCAGAATAAAATTGAGATTACTTGGCCGAT
GGCAAAAGAGTTGAGCCATGTCGAGGAAGTTTTACCAGAATTTGTGCCAGAAAACATCGCCGAAGAAAAAGCCAGTCCAG
AGAATGAGTGGCTACAAAAGGTCTATCAGTTAGTTGCTGAGCATTACCATGACCCTGATTTTGGTACTGCGACAGCGGCT
AAGATGTTATTTATGTCTGAACGTAGTTTACAACGCCGCTTTAAGTCGGCCTCGTCAAGAACGTTAAAAGATTATTTAAC
GGAGGTACGGTTAGAAACTGCTTGCGAACAGTTACTCGCAGGTGAAAAAATCAGTGACGTGGCTTTCAATTGCGGTTTCA
ATGATCCCTCTTACTTCAGCCAGAAGTTCAAGTTGCACTTTGGTTTACCTCCATCAAAGTTCGCGATGGAACAAAACAGT
CACGCAAATTAG

Domains

Predicted by InterProScan.

Helix-turn-helix domain (HTH_18)

(1040-1114)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  tfoS Vibrio cholerae O1 biovar El Tor strain E7946

38.515

100

0.393