Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   NYR82_RS06060 Genome accession   NZ_CP103827
Coordinates   1316053..1317183 (-) Length   376 a.a.
NCBI ID   WP_039197470.1    Uniprot ID   -
Organism   Actinobacillus equuli subsp. haemolyticus strain 3090     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Genomic island 1297905..1316001 1316053..1317183 flank 52


Gene organization within MGE regions


Location: 1297905..1317183
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NYR82_RS05930 (NYR82_05935) - 1297905..1298378 (-) 474 WP_279441486.1 phosphatidylglycerophosphatase A -
  NYR82_RS05935 (NYR82_05940) thiL 1298391..1299356 (-) 966 WP_279441487.1 thiamine-phosphate kinase -
  NYR82_RS05940 (NYR82_05945) nusB 1299421..1299834 (-) 414 WP_278225876.1 transcription antitermination factor NusB -
  NYR82_RS05945 (NYR82_05950) pilQ 1299960..1301256 (-) 1297 Protein_1159 type IV pilus secretin PilQ -
  NYR82_RS05950 (NYR82_05955) - 1301267..1301671 (-) 405 WP_279441488.1 hypothetical protein -
  NYR82_RS05955 (NYR82_05960) - 1301664..1302191 (-) 528 WP_279436620.1 chromosome segregation protein -
  NYR82_RS05960 (NYR82_05965) - 1302194..1302715 (-) 522 WP_279436621.1 hypothetical protein -
  NYR82_RS05965 (NYR82_05970) - 1302697..1303383 (-) 687 WP_279436623.1 pilus assembly protein PilM -
  NYR82_RS05970 (NYR82_05975) - 1303522..1306108 (+) 2587 Protein_1164 penicillin-binding protein 1A -
  NYR82_RS05975 (NYR82_05980) aroK 1306372..1306894 (+) 523 Protein_1165 shikimate kinase AroK -
  NYR82_RS05980 (NYR82_05985) aroB 1306911..1307999 (+) 1089 WP_279441490.1 3-dehydroquinate synthase -
  NYR82_RS05985 (NYR82_05990) - 1308003..1308840 (+) 838 Protein_1167 Dam family site-specific DNA-(adenine-N6)-methyltransferase -
  NYR82_RS05990 (NYR82_05995) - 1308910..1310268 (+) 1359 WP_279441491.1 sodium-dependent transporter -
  NYR82_RS05995 (NYR82_06000) pgi 1310396..1312036 (-) 1641 WP_279441492.1 glucose-6-phosphate isomerase -
  NYR82_RS06000 (NYR82_06005) - 1312075..1312326 (-) 252 WP_039197458.1 accessory factor UbiK family protein -
  NYR82_RS06035 (NYR82_06040) aroE 1313325..1314149 (-) 825 WP_279441493.1 shikimate dehydrogenase -
  NYR82_RS06040 (NYR82_06045) - 1314156..1314710 (-) 555 WP_279441494.1 Sua5/YciO/YrdC/YwlC family protein -
  NYR82_RS06045 (NYR82_06050) - 1314703..1315236 (-) 534 WP_279439262.1 topoisomerase DNA-binding C4 zinc finger domain-containing protein -
  NYR82_RS06050 (NYR82_06055) yqfB 1315236..1315541 (-) 306 WP_275217138.1 N(4)-acetylcytidine aminohydrolase -
  NYR82_RS06055 (NYR82_06060) recX 1315534..1315989 (-) 456 WP_279442792.1 recombination regulator RecX -
  NYR82_RS06060 (NYR82_06065) recA 1316053..1317183 (-) 1131 WP_039197470.1 recombinase RecA Machinery gene

Sequence

Protein


Download         Length: 376 a.a.        Molecular weight: 40560.21 Da        Isoelectric Point: 4.5881

>NTDB_id=725675 NYR82_RS06060 WP_039197470.1 1316053..1317183(-) (recA) [Actinobacillus equuli subsp. haemolyticus strain 3090]
MAADNKKAQKNTVTKQIDPEQKEKALAAALAQIEKQFGKGSIMRLGDTQALDIEAVSTGSIGLDAALGIGGLPMGRIVEI
YGPESSGKTTLTLSVIAQAQKSGKTCAFIDAEHALDPVYARKLGVDTDALLISQPDNGEQALEICDALVRSGAVDVIIVD
SVAALTPKAEIEGDMGDSHMGLQARLMSQALRKLTANIKATNCLVVFINQIRMKIGVMFGNPETTTGGNALKFYASVRLD
IRRSGVVKDGDEVVGSETKVKIVKNKVAPPFREVQFDIMYGEGISRMNELLILAEANGFIQKAGAWFSYEGTKIGQGKNN
AIKWLKENAEIANKIEQEIRELLISTPEKTSAGEQNVLDADDVNDFEDEEFNEEEL

Nucleotide


Download         Length: 1131 bp        

>NTDB_id=725675 NYR82_RS06060 WP_039197470.1 1316053..1317183(-) (recA) [Actinobacillus equuli subsp. haemolyticus strain 3090]
ATGGCAGCTGACAACAAAAAAGCGCAAAAGAATACAGTAACAAAACAAATCGATCCGGAACAAAAAGAAAAAGCATTAGC
AGCTGCTCTTGCCCAAATTGAAAAACAATTTGGTAAAGGATCTATCATGCGCTTAGGTGATACACAAGCGCTTGATATTG
AAGCGGTTTCAACCGGTTCAATCGGTTTAGATGCCGCATTAGGTATCGGCGGTTTACCGATGGGACGTATCGTTGAGATC
TATGGCCCGGAATCTTCAGGTAAAACAACACTGACTTTATCGGTCATTGCGCAAGCACAAAAATCAGGTAAAACTTGTGC
ATTTATTGATGCGGAACACGCACTTGATCCGGTTTATGCACGCAAATTAGGCGTGGATACCGATGCGTTGTTAATTTCTC
AACCGGATAACGGTGAGCAAGCACTTGAGATTTGTGATGCGTTAGTTCGCTCCGGTGCGGTTGATGTGATTATTGTGGAC
TCGGTTGCTGCATTAACGCCGAAAGCGGAAATTGAAGGTGATATGGGCGATTCTCATATGGGCTTACAAGCACGTTTAAT
GTCACAAGCATTACGTAAGTTAACCGCAAATATTAAGGCGACTAACTGCTTAGTGGTGTTTATCAACCAAATTCGTATGA
AGATCGGTGTGATGTTCGGTAACCCGGAAACAACAACCGGCGGTAATGCACTTAAATTCTACGCTTCGGTTCGTTTAGAT
ATCCGCCGTTCAGGTGTAGTTAAAGACGGTGATGAAGTGGTTGGTAGCGAAACGAAAGTGAAAATTGTGAAAAATAAAGT
TGCGCCGCCGTTCCGTGAAGTTCAATTTGACATTATGTATGGCGAAGGGATTTCACGTATGAATGAACTATTGATCCTTG
CTGAAGCGAATGGCTTTATTCAAAAAGCGGGTGCTTGGTTCTCATACGAAGGTACGAAAATCGGCCAAGGTAAAAATAAT
GCAATTAAATGGTTAAAAGAGAACGCAGAGATTGCAAACAAAATTGAACAAGAAATTCGTGAGTTACTCATTTCAACACC
GGAAAAAACATCAGCAGGCGAGCAGAATGTATTAGATGCCGATGATGTGAATGACTTTGAAGACGAAGAGTTTAACGAAG
AAGAACTATAG

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(24-285)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Glaesserella parasuis strain SC1401

84.085

100

0.843
  recA Pseudomonas stutzeri DSM 10701

71.802

91.489

0.657
  recA Vibrio cholerae strain A1552

71.221

91.489

0.652
  recA Vibrio cholerae O1 biovar El Tor strain E7946

71.221

91.489

0.652
  recA Acinetobacter baylyi ADP1

72.404

89.628

0.649
  recA Acinetobacter baumannii D1279779

74.618

86.968

0.649
  recA Neisseria gonorrhoeae MS11

70.988

86.17

0.612
  recA Neisseria gonorrhoeae MS11

70.988

86.17

0.612
  recA Neisseria gonorrhoeae strain FA1090

70.988

86.17

0.612
  recA Ralstonia pseudosolanacearum GMI1000

71.746

83.777

0.601
  recA Streptococcus mutans UA159

56.736

100

0.582
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

64.848

87.766

0.569
  recA Streptococcus mitis SK321

58.038

97.606

0.566
  recA Streptococcus mitis NCTC 12261

60.882

90.426

0.551
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

61.677

88.83

0.548
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

63.975

85.638

0.548
  recA Bacillus subtilis subsp. subtilis str. 168

63.75

85.106

0.543
  recA Streptococcus pneumoniae TIGR4

62.346

86.17

0.537
  recA Streptococcus pneumoniae D39

62.346

86.17

0.537
  recA Streptococcus pneumoniae R6

62.346

86.17

0.537
  recA Streptococcus pneumoniae Rx1

62.346

86.17

0.537
  recA Helicobacter pylori strain NCTC11637

61.212

87.766

0.537
  recA Streptococcus pyogenes NZ131

59.118

90.426

0.535
  recA Helicobacter pylori 26695

60.909

87.766

0.535
  recA Lactococcus lactis subsp. cremoris KW2

57.018

90.957

0.519
  recA Latilactobacillus sakei subsp. sakei 23K

57.944

85.372

0.495