Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   NYR80_RS08400 Genome accession   NZ_CP103825
Coordinates   1831271..1831906 (+) Length   211 a.a.
NCBI ID   WP_279438336.1    Uniprot ID   -
Organism   Actinobacillus equuli subsp. haemolyticus strain 3282     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 1826271..1836906
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NYR80_RS08355 (NYR80_08360) rplP 1826340..1826750 (-) 411 WP_005625160.1 50S ribosomal protein L16 -
  NYR80_RS08360 (NYR80_08365) rpsC 1826764..1827468 (-) 705 WP_014992367.1 30S ribosomal protein S3 -
  NYR80_RS08365 (NYR80_08370) rplV 1827487..1827819 (-) 333 WP_005599292.1 50S ribosomal protein L22 -
  NYR80_RS08370 (NYR80_08375) rpsS 1827830..1828105 (-) 276 WP_005539416.1 30S ribosomal protein S19 -
  NYR80_RS08375 (NYR80_08380) rplB 1828133..1828954 (-) 822 WP_014992368.1 50S ribosomal protein L2 -
  NYR80_RS08380 (NYR80_08385) rplW 1828975..1829280 (-) 306 WP_005599290.1 50S ribosomal protein L23 -
  NYR80_RS08385 (NYR80_08390) rplD 1829277..1829879 (-) 603 WP_005599282.1 50S ribosomal protein L4 -
  NYR80_RS08390 (NYR80_08395) rplC 1829895..1830521 (-) 627 WP_014992369.1 50S ribosomal protein L3 -
  NYR80_RS08395 (NYR80_08400) rpsJ 1830547..1830858 (-) 312 WP_001181005.1 30S ribosomal protein S10 -
  NYR80_RS08400 (NYR80_08405) sxy/tfoX 1831271..1831906 (+) 636 WP_279438336.1 TfoX/Sxy family DNA transformation protein Regulator
  NYR80_RS08405 (NYR80_08410) rpsT 1831965..1832228 (-) 264 WP_005619152.1 30S ribosomal protein S20 -
  NYR80_RS08410 (NYR80_08415) murJ 1832631..1834199 (+) 1569 WP_279436938.1 murein biosynthesis integral membrane protein MurJ -
  NYR80_RS08415 (NYR80_08420) - 1834219..1835286 (+) 1068 WP_279438337.1 MFS transporter -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 24661.86 Da        Isoelectric Point: 9.8102

>NTDB_id=725629 NYR80_RS08400 WP_279438336.1 1831271..1831906(+) (sxy/tfoX) [Actinobacillus equuli subsp. haemolyticus strain 3282]
MKYTTKELERLKALLSPLGEITFKPHFSFLGIFKEDTMFALYKDQNLYVRKSMQYLEEIAQTISIHFLVDRHISNRSKIF
YLLPPSILNNLQTYSHWISSAILEYQQSKAKIENQNQNKIRMLPNLNVSIERLLAKVGIYTVTDLKTVGAINVFVRLIQQ
GLEATALLLFKLYSAIQYKYIYMLTEQEKQDLLIEADNALYQAGLRKRFIP

Nucleotide


Download         Length: 636 bp        

>NTDB_id=725629 NYR80_RS08400 WP_279438336.1 1831271..1831906(+) (sxy/tfoX) [Actinobacillus equuli subsp. haemolyticus strain 3282]
ATGAAATATACAACAAAGGAGCTAGAAAGACTTAAAGCATTATTGTCCCCCCTTGGGGAAATAACCTTTAAGCCTCATTT
CTCGTTCTTAGGTATCTTTAAAGAAGATACCATGTTTGCTCTCTACAAAGATCAAAATTTATATGTGCGCAAGTCGATGC
AATATTTAGAGGAAATAGCTCAAACGATATCTATTCACTTTCTAGTTGATCGCCATATCAGCAATCGTTCTAAAATCTTT
TATCTTCTTCCTCCTTCCATTCTCAATAATCTGCAAACTTATTCCCACTGGATATCCTCAGCTATTCTCGAATATCAACA
GTCTAAAGCAAAAATCGAAAACCAAAATCAGAATAAAATTCGTATGTTGCCAAACTTAAATGTCAGTATTGAGAGATTAC
TGGCTAAAGTCGGTATTTATACGGTAACAGATTTAAAAACGGTAGGTGCAATTAACGTTTTCGTACGTTTAATCCAACAA
GGTTTGGAAGCAACCGCATTGTTATTATTTAAACTATATAGTGCGATTCAATATAAATATATTTATATGCTGACAGAACA
AGAAAAACAGGATTTACTGATTGAAGCCGACAATGCGCTTTATCAAGCTGGATTACGGAAAAGATTCATACCGTGA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-102)

TfoX C-terminal domain (TfoX_C)

(117-193)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Actinobacillus suis H91-0380

92.381

99.526

0.919
  sxy/tfoX Actinobacillus pleuropneumoniae strain HS143

63.679

100

0.64
  sxy/tfoX Glaesserella parasuis strain SC1401

40.476

99.526

0.403