Detailed information    

insolico Bioinformatically predicted

Overview

Name   HI0659   Type   Machinery gene
Locus tag   NYR79_RS00370 Genome accession   NZ_CP103824
Coordinates   89690..89980 (-) Length   96 a.a.
NCBI ID   WP_039198813.1    Uniprot ID   -
Organism   Actinobacillus equuli subsp. haemolyticus strain 3524     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 84690..94980
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NYR79_RS00340 (NYR79_00340) artM 85032..85715 (-) 684 WP_279455017.1 arginine ABC transporter permease ArtM -
  NYR79_RS00345 (NYR79_00345) artQ 85715..86386 (-) 672 WP_015674486.1 arginine ABC transporter permease ArtQ -
  NYR79_RS00350 (NYR79_00350) - 86392..87111 (-) 720 WP_275217249.1 transporter substrate-binding domain-containing protein -
  NYR79_RS00355 (NYR79_00355) artP 87132..87866 (-) 735 WP_279438545.1 arginine ABC transporter ATP-binding protein ArtP -
  NYR79_RS00360 (NYR79_00360) - 88090..88587 (-) 498 WP_278226779.1 YbhB/YbcL family Raf kinase inhibitor-like protein -
  NYR79_RS00365 (NYR79_00365) - 88660..89622 (+) 963 WP_039198815.1 calcium/sodium antiporter -
  NYR79_RS00370 (NYR79_00370) HI0659 89690..89980 (-) 291 WP_039198813.1 helix-turn-helix transcriptional regulator Machinery gene
  NYR79_RS00375 (NYR79_00375) - 89961..90332 (-) 372 WP_005621659.1 type II toxin-antitoxin system RelE/ParE family toxin -
  NYR79_RS00380 (NYR79_00380) - 90550..92298 (+) 1749 WP_279455019.1 protein-disulfide reductase DsbD -
  NYR79_RS00385 (NYR79_00385) - 92357..92926 (+) 570 WP_279455527.1 elongation factor P hydroxylase -
  NYR79_RS00390 (NYR79_00390) rsmI 92970..93824 (-) 855 WP_039198806.1 16S rRNA (cytidine(1402)-2'-O)-methyltransferase -

Sequence

Protein


Download         Length: 96 a.a.        Molecular weight: 10821.59 Da        Isoelectric Point: 8.7275

>NTDB_id=725585 NYR79_RS00370 WP_039198813.1 89690..89980(-) (HI0659) [Actinobacillus equuli subsp. haemolyticus strain 3524]
MSPIGSSWTSFEREVFNELEMEENHFRVKLILEIIETRQALGISQRKLEKLSGVKQSMIARIEKGSSNPSLGTLLKLLVP
LGKTLQIVSLDETHSK

Nucleotide


Download         Length: 291 bp        

>NTDB_id=725585 NYR79_RS00370 WP_039198813.1 89690..89980(-) (HI0659) [Actinobacillus equuli subsp. haemolyticus strain 3524]
ATGAGCCCCATTGGTTCTAGTTGGACATCATTTGAACGAGAGGTGTTTAATGAGTTGGAAATGGAAGAAAACCATTTCCG
CGTTAAATTAATTCTTGAAATCATTGAAACCCGACAAGCACTAGGCATTTCACAGCGTAAATTAGAAAAACTAAGCGGCG
TTAAACAATCTATGATTGCTCGCATTGAAAAGGGAAGTTCCAATCCTTCTCTTGGTACGTTACTGAAGTTACTGGTGCCT
TTGGGGAAAACATTACAAATTGTCTCTTTAGACGAAACTCATTCTAAATAA

Domains

Predicted by InterproScan.

Helix-turn-helix (HTH_3)

(35-86)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  HI0659 Haemophilus influenzae Rd KW20

65.556

93.75

0.615