Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   NYR77_RS08335 Genome accession   NZ_CP103822
Coordinates   1809481..1810116 (+) Length   211 a.a.
NCBI ID   WP_279440566.1    Uniprot ID   -
Organism   Actinobacillus equuli subsp. haemolyticus strain 3617     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 1804481..1815116
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NYR77_RS08290 (NYR77_08285) rplP 1804550..1804960 (-) 411 WP_005625160.1 50S ribosomal protein L16 -
  NYR77_RS08295 (NYR77_08290) rpsC 1804974..1805678 (-) 705 WP_014992367.1 30S ribosomal protein S3 -
  NYR77_RS08300 (NYR77_08295) rplV 1805697..1806029 (-) 333 WP_005599292.1 50S ribosomal protein L22 -
  NYR77_RS08305 (NYR77_08300) rpsS 1806040..1806315 (-) 276 WP_005539416.1 30S ribosomal protein S19 -
  NYR77_RS08310 (NYR77_08305) rplB 1806343..1807164 (-) 822 WP_014992368.1 50S ribosomal protein L2 -
  NYR77_RS08315 (NYR77_08310) rplW 1807185..1807490 (-) 306 WP_005599290.1 50S ribosomal protein L23 -
  NYR77_RS08320 (NYR77_08315) rplD 1807487..1808089 (-) 603 WP_005599282.1 50S ribosomal protein L4 -
  NYR77_RS08325 (NYR77_08320) rplC 1808105..1808731 (-) 627 WP_014992369.1 50S ribosomal protein L3 -
  NYR77_RS08330 (NYR77_08325) rpsJ 1808757..1809068 (-) 312 WP_001181005.1 30S ribosomal protein S10 -
  NYR77_RS08335 (NYR77_08330) sxy/tfoX 1809481..1810116 (+) 636 WP_279440566.1 TfoX/Sxy family DNA transformation protein Regulator
  NYR77_RS08340 (NYR77_08335) rpsT 1810175..1810438 (-) 264 WP_005619152.1 30S ribosomal protein S20 -
  NYR77_RS08345 (NYR77_08340) murJ 1810842..1812410 (+) 1569 WP_039198208.1 murein biosynthesis integral membrane protein MurJ -
  NYR77_RS08350 (NYR77_08345) - 1812431..1813498 (+) 1068 WP_279440568.1 MFS transporter -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 24615.87 Da        Isoelectric Point: 9.9799

>NTDB_id=725575 NYR77_RS08335 WP_279440566.1 1809481..1810116(+) (sxy/tfoX) [Actinobacillus equuli subsp. haemolyticus strain 3617]
MKYTTKELERLKALLSPLGEITFKPHFSFLGIFKDDTMFALYKDQNLYVRKSMQYLDEIAQTISMHFLVDRHISNRSKIF
YLLPPSILNNLQTYSHWISSAILEYQQSKTKIENQNQNKIRMLPNLNISIERLLAKVGIHTVADLKSMGAISVFVRLIQQ
GLEATPLLLFKLHGAIQYKYIYMLTEQEKQNLLIEADNALYQAGLRKRFIL

Nucleotide


Download         Length: 636 bp        

>NTDB_id=725575 NYR77_RS08335 WP_279440566.1 1809481..1810116(+) (sxy/tfoX) [Actinobacillus equuli subsp. haemolyticus strain 3617]
ATGAAATATACAACAAAGGAGCTAGAAAGACTTAAAGCATTATTGTCCCCCCTTGGGGAAATAACCTTTAAGCCTCATTT
TTCGTTCTTAGGTATCTTTAAAGACGATACTATGTTTGCTCTCTACAAAGATCAAAATTTATATGTGCGCAAATCGATGC
AATATTTAGATGAAATAGCTCAAACAATATCCATGCACTTTCTGGTTGACCGCCATATCAGTAATCGTTCCAAAATCTTT
TATCTCCTCCCCCCTTCAATTCTCAATAATCTACAAACCTATTCCCATTGGATATCTTCAGCTATTCTCGAATATCAACA
ATCTAAAACAAAAATTGAAAATCAGAATCAGAATAAAATTCGTATGCTGCCCAACTTAAATATCAGTATTGAAAGGCTAC
TCGCTAAAGTTGGTATTCATACAGTAGCGGATCTAAAAAGTATGGGTGCAATTAGCGTTTTTGTACGTCTAATCCAGCAA
GGTTTGGAAGCTACGCCACTATTATTATTTAAACTACATGGCGCGATTCAATATAAATATATTTATATGCTGACCGAACA
AGAGAAACAGAATTTACTTATTGAAGCTGACAATGCGCTTTATCAGGCAGGATTACGGAAGAGATTCATACTATAA

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(117-193)

TfoX N-terminal domain (TfoX_N)

(14-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Actinobacillus suis H91-0380

89.1

100

0.891
  sxy/tfoX Actinobacillus pleuropneumoniae strain HS143

61.792

100

0.621
  sxy/tfoX Glaesserella parasuis strain SC1401

40.476

99.526

0.403