Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilH   Type   Machinery gene
Locus tag   PZ484_RS02225 Genome accession   NZ_CP119298
Coordinates   475808..476173 (+) Length   121 a.a.
NCBI ID   WP_003084587.1    Uniprot ID   A0A0H2ZKW2
Organism   Pseudomonas aeruginosa strain SNDPR-01     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 470808..481173
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PZ484_RS02195 pyrR 471430..471942 (-) 513 WP_003084574.1 bifunctional pyr operon transcriptional regulator/uracil phosphoribosyltransferase PyrR -
  PZ484_RS02200 ruvX 472054..472488 (-) 435 WP_003121753.1 Holliday junction resolvase RuvX -
  PZ484_RS02205 - 472488..473057 (-) 570 WP_003100947.1 YqgE/AlgH family protein -
  PZ484_RS02210 - 473106..473999 (-) 894 WP_009315060.1 energy transducer TonB -
  PZ484_RS02215 gshB 474146..475099 (-) 954 WP_003100943.1 glutathione synthase -
  PZ484_RS02220 pilG 475354..475761 (+) 408 WP_003084583.1 twitching motility response regulator PilG Regulator
  PZ484_RS02225 pilH 475808..476173 (+) 366 WP_003084587.1 twitching motility response regulator PilH Machinery gene
  PZ484_RS02230 - 476224..476760 (+) 537 WP_003084590.1 chemotaxis protein CheW -
  PZ484_RS02235 pilJ 476845..478893 (+) 2049 WP_003100940.1 chemotaxis chemoreceptor PilJ -
  PZ484_RS02240 pilK 478954..479829 (+) 876 WP_003100938.1 type 4 fimbrial methyltransferase PilK -

Sequence

Protein


Download         Length: 121 a.a.        Molecular weight: 13273.30 Da        Isoelectric Point: 5.1961

>NTDB_id=725563 PZ484_RS02225 WP_003084587.1 475808..476173(+) (pilH) [Pseudomonas aeruginosa strain SNDPR-01]
MARILIVDDSPTEMYKLTAMLEKHGHQVLKAENGGDGVALARQEKPDVVLMDIVMPGLNGFQATRQLTKDAETSAIPVII
VTTKDQETDKVWGKRQGARDYLTKPVDEETLLKTINAVLAG

Nucleotide


Download         Length: 366 bp        

>NTDB_id=725563 PZ484_RS02225 WP_003084587.1 475808..476173(+) (pilH) [Pseudomonas aeruginosa strain SNDPR-01]
ATGGCTCGTATTTTGATTGTTGATGACTCTCCGACCGAGATGTACAAGCTGACCGCCATGCTGGAAAAGCATGGTCACCA
GGTACTCAAGGCCGAGAACGGCGGCGACGGCGTCGCCCTGGCCCGCCAGGAAAAGCCCGACGTGGTCCTGATGGACATCG
TCATGCCCGGCCTCAACGGCTTCCAGGCGACCCGTCAGTTGACCAAGGACGCCGAGACCAGCGCCATCCCGGTGATCATC
GTCACCACCAAGGACCAGGAGACCGACAAGGTCTGGGGCAAGCGCCAGGGCGCTCGCGACTACCTGACCAAGCCGGTGGA
CGAAGAGACCCTGCTGAAAACCATCAATGCGGTGCTGGCGGGCTGA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(4-116)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H2ZKW2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilH Synechocystis sp. PCC 6803

36.975

98.347

0.364