Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA/comE1   Type   Machinery gene
Locus tag   NYR76_RS10120 Genome accession   NZ_CP103821
Coordinates   2181975..2182337 (-) Length   120 a.a.
NCBI ID   WP_275218340.1    Uniprot ID   -
Organism   Actinobacillus equuli subsp. equuli strain 3750     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2176975..2187337
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NYR76_RS10105 (NYR76_10105) - 2177769..2178389 (+) 621 WP_015674354.1 MerR family transcriptional regulator -
  NYR76_RS10110 (NYR76_10110) gshAB 2178481..2180754 (-) 2274 WP_279478262.1 bifunctional glutamate--cysteine ligase GshA/glutathione synthetase GshB -
  NYR76_RS10115 (NYR76_10115) asd 2180906..2181799 (-) 894 WP_279478263.1 archaetidylserine decarboxylase -
  NYR76_RS10120 (NYR76_10120) comEA/comE1 2181975..2182337 (-) 363 WP_275218340.1 ComEA family DNA-binding protein Machinery gene
  NYR76_RS10125 (NYR76_10125) - 2182666..2184039 (+) 1374 WP_279443183.1 LysM-like peptidoglycan-binding domain-containing protein -
  NYR76_RS10130 (NYR76_10130) - 2184113..2184568 (+) 456 WP_275218342.1 MliC family protein -
  NYR76_RS10135 (NYR76_10135) waaF 2184651..2185688 (+) 1038 WP_279478264.1 lipopolysaccharide heptosyltransferase II -
  NYR76_RS10140 (NYR76_10140) rfaC 2185764..2186723 (+) 960 WP_279478265.1 lipopolysaccharide heptosyltransferase RfaC -
  NYR76_RS10145 (NYR76_10145) rpsL 2186847..2187221 (+) 375 WP_005543325.1 30S ribosomal protein S12 -

Sequence

Protein


Download         Length: 120 a.a.        Molecular weight: 12784.62 Da        Isoelectric Point: 10.0523

>NTDB_id=725556 NYR76_RS10120 WP_275218340.1 2181975..2182337(-) (comEA/comE1) [Actinobacillus equuli subsp. equuli strain 3750]
MKTRSKFGLSLLIGMLSTGTFAAEKVKPTDTEPTPVVQNAQAVTGHNHAEMMTNANLVNINTATAAEIQDKLVGIGAKKA
QAIVEYRTKNGAFSSLEQLTDVSGIGKATLDKNRDRIALQ

Nucleotide


Download         Length: 363 bp        

>NTDB_id=725556 NYR76_RS10120 WP_275218340.1 2181975..2182337(-) (comEA/comE1) [Actinobacillus equuli subsp. equuli strain 3750]
ATGAAAACACGTTCAAAATTTGGTCTAAGTTTATTAATCGGTATGTTATCTACCGGTACGTTTGCAGCTGAAAAAGTAAA
GCCTACCGACACAGAACCTACTCCTGTAGTTCAAAACGCACAAGCAGTCACAGGGCATAACCATGCCGAAATGATGACCA
ATGCAAACTTAGTGAACATTAACACAGCGACCGCCGCTGAAATCCAAGATAAATTGGTTGGTATTGGCGCTAAAAAAGCA
CAAGCGATAGTTGAATATCGTACGAAAAATGGCGCGTTTAGCAGTTTGGAACAACTTACCGATGTATCTGGCATAGGTAA
AGCTACGCTTGATAAAAATCGTGATCGCATTGCATTACAATAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(54-117)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA/comE1 Glaesserella parasuis strain SC1401

64.167

100

0.642