Detailed information    

insolico Bioinformatically predicted

Overview

Name   HI0659   Type   Machinery gene
Locus tag   NYR75_RS10670 Genome accession   NZ_CP103820
Coordinates   2273775..2274065 (+) Length   96 a.a.
NCBI ID   WP_039198813.1    Uniprot ID   -
Organism   Actinobacillus equuli subsp. haemolyticus strain 3820     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2268775..2279065
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NYR75_RS10650 (NYR75_10655) rsmI 2269931..2270785 (+) 855 WP_279471818.1 16S rRNA (cytidine(1402)-2'-O)-methyltransferase -
  NYR75_RS10655 (NYR75_10660) - 2270829..2271398 (-) 570 WP_279437970.1 elongation factor P hydroxylase -
  NYR75_RS10660 (NYR75_10665) - 2271457..2273205 (-) 1749 WP_279471819.1 protein-disulfide reductase DsbD -
  NYR75_RS10665 (NYR75_10670) - 2273423..2273794 (+) 372 WP_005621659.1 type II toxin-antitoxin system RelE/ParE family toxin -
  NYR75_RS10670 (NYR75_10675) HI0659 2273775..2274065 (+) 291 WP_039198813.1 helix-turn-helix transcriptional regulator Machinery gene
  NYR75_RS10675 (NYR75_10680) - 2274133..2275095 (-) 963 WP_039198815.1 calcium/sodium antiporter -
  NYR75_RS10680 (NYR75_10685) - 2275168..2275665 (+) 498 WP_279471820.1 YbhB/YbcL family Raf kinase inhibitor-like protein -
  NYR75_RS10685 (NYR75_10690) artP 2275889..2276623 (+) 735 WP_279471821.1 arginine ABC transporter ATP-binding protein ArtP -
  NYR75_RS10690 (NYR75_10695) - 2276644..2277363 (+) 720 WP_279471822.1 transporter substrate-binding domain-containing protein -
  NYR75_RS10695 (NYR75_10700) artQ 2277369..2278040 (+) 672 WP_015674486.1 arginine ABC transporter permease ArtQ -
  NYR75_RS10700 (NYR75_10705) artM 2278040..2278723 (+) 684 WP_279443240.1 arginine ABC transporter permease ArtM -

Sequence

Protein


Download         Length: 96 a.a.        Molecular weight: 10821.59 Da        Isoelectric Point: 8.7275

>NTDB_id=725530 NYR75_RS10670 WP_039198813.1 2273775..2274065(+) (HI0659) [Actinobacillus equuli subsp. haemolyticus strain 3820]
MSPIGSSWTSFEREVFNELEMEENHFRVKLILEIIETRQALGISQRKLEKLSGVKQSMIARIEKGSSNPSLGTLLKLLVP
LGKTLQIVSLDETHSK

Nucleotide


Download         Length: 291 bp        

>NTDB_id=725530 NYR75_RS10670 WP_039198813.1 2273775..2274065(+) (HI0659) [Actinobacillus equuli subsp. haemolyticus strain 3820]
ATGAGCCCCATTGGTTCTAGTTGGACATCATTTGAACGAGAGGTGTTTAATGAGTTGGAAATGGAAGAAAACCATTTCCG
CGTTAAATTAATTCTTGAAATCATTGAAACCCGACAAGCACTAGGCATTTCACAGCGTAAATTAGAAAAACTAAGCGGCG
TTAAACAATCTATGATTGCTCGCATTGAAAAGGGAAGTTCCAATCCTTCTCTTGGTACGTTACTGAAGTTACTGGTGCCT
TTGGGGAAAACATTACAAATTGTCTCTTTAGACGAAACTCATTCTAAATAA

Domains

Predicted by InterproScan.

Helix-turn-helix (HTH_3)

(35-86)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  HI0659 Haemophilus influenzae Rd KW20

65.556

93.75

0.615