Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   P0097_RS16615 Genome accession   NZ_CP119187
Coordinates   3422637..3423242 (-) Length   201 a.a.
NCBI ID   WP_001195025.1    Uniprot ID   P0A7H7
Organism   Escherichia coli strain PA11     
Function   promote later steps in plasmid transformation (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3417637..3428242
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P0097_RS16595 (P0097_16590) aes 3417674..3418633 (+) 960 WP_047402716.1 acetyl esterase -
  P0097_RS16600 (P0097_16595) hemH 3418630..3419592 (-) 963 WP_001250105.1 ferrochelatase -
  P0097_RS16605 (P0097_16600) adk 3419828..3420472 (-) 645 WP_001220233.1 adenylate kinase -
  P0097_RS16610 (P0097_16605) htpG 3420653..3422527 (-) 1875 WP_000678201.1 molecular chaperone HtpG -
  P0097_RS16615 (P0097_16610) recR 3422637..3423242 (-) 606 WP_001195025.1 recombination mediator RecR Machinery gene
  P0097_RS16620 (P0097_16615) ybaB 3423242..3423571 (-) 330 WP_000467098.1 YbaB/EbfC family nucleoid-associated protein -
  P0097_RS16625 (P0097_16620) dnaX 3423624..3425555 (-) 1932 WP_000122023.1 DNA polymerase III subunit gamma/tau -
  P0097_RS16630 (P0097_16625) apt 3425684..3426235 (-) 552 WP_000127356.1 adenine phosphoribosyltransferase -
  P0097_RS16635 (P0097_16630) ybaN 3426388..3426765 (-) 378 WP_001188905.1 DUF454 family protein -
  P0097_RS16640 (P0097_16635) priC 3426835..3427362 (+) 528 WP_000844876.1 primosomal replication protein N'' -
  P0097_RS16645 (P0097_16640) rsmS 3427376..3427537 (+) 162 WP_000051146.1 pleiotropic regulatory protein RsmS -
  P0097_RS16650 (P0097_16645) - 3427590..3427688 (-) 99 Protein_3249 hypothetical protein -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 21963.00 Da        Isoelectric Point: 4.9097

>NTDB_id=725529 P0097_RS16615 WP_001195025.1 3422637..3423242(-) (recR) [Escherichia coli strain PA11]
MQTSPLLTQLMEALRCLPGVGPKSAQRMAFTLLQRDRSGGMRLAQALTRAMSEIGHCADCRTFTEQEVCNICSNPRRQEN
GQICVVESPADIYAIEQTGQFSGRYFVLMGHLSPLDGIGPDDIGLDRLEQRLAEEKITEVILATNPTVEGEATANYIAEL
CAQYDVEASRIAHGVPVGGELEMVDGTTLSHSLAGRHKIRF

Nucleotide


Download         Length: 606 bp        

>NTDB_id=725529 P0097_RS16615 WP_001195025.1 3422637..3423242(-) (recR) [Escherichia coli strain PA11]
ATGCAAACCAGCCCGCTGTTAACACAGCTTATGGAAGCACTGCGCTGTCTGCCGGGCGTTGGCCCGAAGTCGGCGCAGCG
TATGGCGTTCACGCTGCTTCAGCGCGATCGTAGCGGCGGGATGCGTCTGGCGCAGGCGCTCACCCGGGCGATGTCGGAAA
TCGGCCACTGCGCCGATTGCCGCACTTTCACCGAACAGGAAGTCTGTAACATCTGTTCGAATCCGCGTCGTCAGGAAAAC
GGTCAAATCTGTGTGGTGGAGAGTCCGGCGGACATCTACGCCATTGAGCAGACGGGGCAGTTTTCTGGTCGTTATTTTGT
GTTGATGGGGCATCTGTCACCGCTGGACGGCATCGGTCCGGATGATATCGGCCTTGATCGTCTGGAACAGCGTCTGGCAG
AGGAAAAAATCACTGAAGTGATCCTCGCCACCAATCCCACGGTTGAAGGTGAAGCTACCGCTAACTACATTGCCGAGCTT
TGCGCGCAATATGACGTGGAAGCCAGCCGAATCGCTCATGGCGTACCGGTTGGCGGCGAACTGGAAATGGTCGATGGCAC
CACGCTGTCACACTCCCTTGCCGGGCGTCATAAGATTCGTTTTTAA

Domains

Predicted by InterProScan.

RecR protein (RecR_ZnF)

(41-77)

Toprim domain (Toprim_4)

(81-172)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0A7H7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

45.226

99.005

0.448
  recR Bacillus subtilis subsp. subtilis str. 168

44.724

99.005

0.443