Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA/comE1   Type   Machinery gene
Locus tag   NYR75_RS10005 Genome accession   NZ_CP103820
Coordinates   2132725..2133087 (-) Length   120 a.a.
NCBI ID   WP_275218340.1    Uniprot ID   -
Organism   Actinobacillus equuli subsp. haemolyticus strain 3820     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2127725..2138087
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NYR75_RS09990 (NYR75_09995) - 2128519..2129139 (+) 621 WP_279455067.1 MerR family transcriptional regulator -
  NYR75_RS09995 (NYR75_10000) gshAB 2129231..2131504 (-) 2274 WP_279471769.1 bifunctional glutamate--cysteine ligase GshA/glutathione synthetase GshB -
  NYR75_RS10000 (NYR75_10005) asd 2131656..2132549 (-) 894 WP_039198612.1 archaetidylserine decarboxylase -
  NYR75_RS10005 (NYR75_10010) comEA/comE1 2132725..2133087 (-) 363 WP_275218340.1 ComEA family DNA-binding protein Machinery gene
  NYR75_RS10010 (NYR75_10015) - 2133416..2134792 (+) 1377 WP_279471770.1 LysM-like peptidoglycan-binding domain-containing protein -
  NYR75_RS10015 (NYR75_10020) - 2134866..2135321 (+) 456 WP_275218342.1 MliC family protein -
  NYR75_RS10020 (NYR75_10025) waaF 2135404..2136441 (+) 1038 WP_279471771.1 lipopolysaccharide heptosyltransferase II -
  NYR75_RS10025 (NYR75_10030) rfaC 2136517..2137476 (+) 960 WP_279472323.1 lipopolysaccharide heptosyltransferase RfaC -
  NYR75_RS10030 (NYR75_10035) rpsL 2137600..2137974 (+) 375 WP_005543325.1 30S ribosomal protein S12 -

Sequence

Protein


Download         Length: 120 a.a.        Molecular weight: 12784.62 Da        Isoelectric Point: 10.0523

>NTDB_id=725529 NYR75_RS10005 WP_275218340.1 2132725..2133087(-) (comEA/comE1) [Actinobacillus equuli subsp. haemolyticus strain 3820]
MKTRSKFGLSLLIGMLSTGTFAAEKVKPTDTEPTPVVQNAQAVTGHNHAEMMTNANLVNINTATAAEIQDKLVGIGAKKA
QAIVEYRTKNGAFSSLEQLTDVSGIGKATLDKNRDRIALQ

Nucleotide


Download         Length: 363 bp        

>NTDB_id=725529 NYR75_RS10005 WP_275218340.1 2132725..2133087(-) (comEA/comE1) [Actinobacillus equuli subsp. haemolyticus strain 3820]
ATGAAAACACGTTCAAAATTTGGCCTAAGTTTATTAATCGGTATGTTATCTACCGGTACGTTTGCAGCTGAAAAAGTAAA
GCCTACCGACACAGAACCTACTCCTGTAGTTCAAAACGCACAAGCAGTCACAGGGCATAACCATGCCGAAATGATGACCA
ATGCAAACTTAGTGAACATTAACACAGCGACCGCCGCTGAAATCCAAGATAAATTGGTTGGTATTGGCGCTAAAAAAGCA
CAAGCGATAGTTGAATATCGTACGAAAAACGGCGCGTTTAGCAGTTTGGAACAACTTACCGATGTATCTGGCATAGGTAA
AGCTACGCTTGATAAAAATCGTGATCGCATTGCATTACAATAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(54-117)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA/comE1 Glaesserella parasuis strain SC1401

64.167

100

0.642