Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA/comE1   Type   Machinery gene
Locus tag   NYR74_RS06390 Genome accession   NZ_CP103819
Coordinates   1398539..1398901 (+) Length   120 a.a.
NCBI ID   WP_279453396.1    Uniprot ID   -
Organism   Actinobacillus equuli subsp. haemolyticus strain 3873     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1393539..1403901
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NYR74_RS06365 (NYR74_06365) rpsL 1393640..1394014 (-) 375 WP_005543325.1 30S ribosomal protein S12 -
  NYR74_RS06370 (NYR74_06370) rfaC 1394138..1395097 (-) 960 WP_279453400.1 lipopolysaccharide heptosyltransferase RfaC -
  NYR74_RS06375 (NYR74_06375) waaF 1395173..1396210 (-) 1038 WP_279453399.1 lipopolysaccharide heptosyltransferase II -
  NYR74_RS06380 (NYR74_06380) - 1396293..1396748 (-) 456 WP_279453398.1 MliC family protein -
  NYR74_RS06385 (NYR74_06385) - 1396822..1398198 (-) 1377 WP_279453397.1 LysM-like peptidoglycan-binding domain-containing protein -
  NYR74_RS06390 (NYR74_06390) comEA/comE1 1398539..1398901 (+) 363 WP_279453396.1 ComEA family DNA-binding protein Machinery gene
  NYR74_RS06395 (NYR74_06395) asd 1399077..1399970 (+) 894 WP_279453395.1 archaetidylserine decarboxylase -
  NYR74_RS06400 (NYR74_06400) gshAB 1400121..1402394 (+) 2274 WP_279453394.1 bifunctional glutamate--cysteine ligase GshA/glutathione synthetase GshB -
  NYR74_RS06405 (NYR74_06405) - 1402486..1403106 (-) 621 WP_015674354.1 MerR family transcriptional regulator -

Sequence

Protein


Download         Length: 120 a.a.        Molecular weight: 12750.60 Da        Isoelectric Point: 10.0523

>NTDB_id=725492 NYR74_RS06390 WP_279453396.1 1398539..1398901(+) (comEA/comE1) [Actinobacillus equuli subsp. haemolyticus strain 3873]
MKTRSKLGLSLLIGMLSTGTFAAEKVKPTDTEPTPVVQNAQAVTGHNHAEMMTNANLVNINTATAAEIQDKLVGIGAKKA
QAIVEYRTKNGAFSSLEQLTDVSGIGKATLDKNRDRIALQ

Nucleotide


Download         Length: 363 bp        

>NTDB_id=725492 NYR74_RS06390 WP_279453396.1 1398539..1398901(+) (comEA/comE1) [Actinobacillus equuli subsp. haemolyticus strain 3873]
ATGAAAACACGTTCAAAACTTGGCTTAAGTCTGTTAATCGGTATGTTATCTACCGGTACGTTTGCAGCTGAAAAAGTAAA
GCCTACCGACACAGAACCTACTCCTGTAGTTCAAAACGCACAAGCAGTCACAGGGCATAACCATGCCGAAATGATGACCA
ATGCAAACTTAGTGAACATTAACACAGCGACCGCCGCTGAAATCCAAGATAAATTGGTTGGTATTGGCGCTAAAAAAGCA
CAAGCGATAGTTGAATATCGTACGAAAAACGGCGCGTTTAGCAGTTTGGAACAACTTACCGATGTATCTGGCATAGGTAA
AGCTACGCTTGATAAAAATCGTGATCGCATTGCATTACAATAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(54-117)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA/comE1 Glaesserella parasuis strain SC1401

64.167

100

0.642