Detailed information    

insolico Bioinformatically predicted

Overview

Name   HI0659   Type   Machinery gene
Locus tag   NYR74_RS05775 Genome accession   NZ_CP103819
Coordinates   1270409..1270699 (-) Length   96 a.a.
NCBI ID   WP_039198813.1    Uniprot ID   -
Organism   Actinobacillus equuli subsp. haemolyticus strain 3873     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1265409..1275699
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NYR74_RS05745 (NYR74_05745) artM 1265773..1266456 (-) 684 WP_279453445.1 arginine ABC transporter permease ArtM -
  NYR74_RS05750 (NYR74_05750) artQ 1266456..1267127 (-) 672 WP_275217250.1 arginine ABC transporter permease ArtQ -
  NYR74_RS05755 (NYR74_05755) - 1267133..1267852 (-) 720 WP_279453444.1 transporter substrate-binding domain-containing protein -
  NYR74_RS05760 (NYR74_05760) artP 1267873..1268607 (-) 735 WP_279438545.1 arginine ABC transporter ATP-binding protein ArtP -
  NYR74_RS05765 (NYR74_05765) - 1268808..1269306 (-) 499 Protein_1121 YbhB/YbcL family Raf kinase inhibitor-like protein -
  NYR74_RS05770 (NYR74_05770) - 1269379..1270341 (+) 963 WP_039198815.1 calcium/sodium antiporter -
  NYR74_RS05775 (NYR74_05775) HI0659 1270409..1270699 (-) 291 WP_039198813.1 helix-turn-helix transcriptional regulator Machinery gene
  NYR74_RS05780 (NYR74_05780) - 1270680..1271051 (-) 372 WP_005621659.1 type II toxin-antitoxin system RelE/ParE family toxin -
  NYR74_RS05785 (NYR74_05785) - 1271269..1273020 (+) 1752 WP_279453442.1 protein-disulfide reductase DsbD -
  NYR74_RS05790 (NYR74_05790) - 1273079..1273648 (+) 570 WP_279441422.1 elongation factor P hydroxylase -
  NYR74_RS05795 (NYR74_05795) rsmI 1273692..1274546 (-) 855 WP_039198806.1 16S rRNA (cytidine(1402)-2'-O)-methyltransferase -

Sequence

Protein


Download         Length: 96 a.a.        Molecular weight: 10821.59 Da        Isoelectric Point: 8.7275

>NTDB_id=725491 NYR74_RS05775 WP_039198813.1 1270409..1270699(-) (HI0659) [Actinobacillus equuli subsp. haemolyticus strain 3873]
MSPIGSSWTSFEREVFNELEMEENHFRVKLILEIIETRQALGISQRKLEKLSGVKQSMIARIEKGSSNPSLGTLLKLLVP
LGKTLQIVSLDETHSK

Nucleotide


Download         Length: 291 bp        

>NTDB_id=725491 NYR74_RS05775 WP_039198813.1 1270409..1270699(-) (HI0659) [Actinobacillus equuli subsp. haemolyticus strain 3873]
ATGAGCCCCATTGGTTCTAGTTGGACATCATTTGAACGAGAGGTGTTTAATGAGTTGGAAATGGAAGAAAACCATTTTCG
CGTTAAATTAATTCTTGAAATCATTGAAACCCGACAAGCACTAGGCATTTCACAGCGTAAATTAGAAAAACTAAGCGGCG
TTAAACAATCTATGATTGCTCGCATTGAAAAGGGAAGTTCCAATCCTTCTCTTGGTACGTTACTGAAGTTACTGGTGCCT
TTGGGGAAAACATTACAAATTGTCTCTTTAGACGAAACTCATTCTAAATAA

Domains

Predicted by InterproScan.

Helix-turn-helix (HTH_3)

(35-86)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  HI0659 Haemophilus influenzae Rd KW20

65.556

93.75

0.615