Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA/comE1   Type   Machinery gene
Locus tag   NYR71_RS09885 Genome accession   NZ_CP103817
Coordinates   2147047..2147409 (-) Length   120 a.a.
NCBI ID   WP_275218340.1    Uniprot ID   -
Organism   Actinobacillus equuli subsp. equuli strain 4005     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2142047..2152409
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NYR71_RS09870 (NYR71_09870) - 2142841..2143461 (+) 621 WP_279439616.1 MerR family transcriptional regulator -
  NYR71_RS09875 (NYR71_09875) gshAB 2143553..2145826 (-) 2274 WP_279439617.1 bifunctional glutamate--cysteine ligase GshA/glutathione synthetase GshB -
  NYR71_RS09880 (NYR71_09880) asd 2145978..2146871 (-) 894 WP_279439618.1 archaetidylserine decarboxylase -
  NYR71_RS09885 (NYR71_09885) comEA/comE1 2147047..2147409 (-) 363 WP_275218340.1 ComEA family DNA-binding protein Machinery gene
  NYR71_RS09890 (NYR71_09890) - 2147738..2149114 (+) 1377 WP_278226644.1 LysM-like peptidoglycan-binding domain-containing protein -
  NYR71_RS09895 (NYR71_09895) - 2149188..2149643 (+) 456 WP_275218342.1 MliC family protein -
  NYR71_RS09900 (NYR71_09900) waaF 2149726..2150763 (+) 1038 WP_279439619.1 lipopolysaccharide heptosyltransferase II -
  NYR71_RS09905 (NYR71_09905) rfaC 2150839..2151798 (+) 960 WP_279439620.1 lipopolysaccharide heptosyltransferase RfaC -
  NYR71_RS09910 (NYR71_09910) rpsL 2151922..2152296 (+) 375 WP_005543325.1 30S ribosomal protein S12 -

Sequence

Protein


Download         Length: 120 a.a.        Molecular weight: 12784.62 Da        Isoelectric Point: 10.0523

>NTDB_id=725455 NYR71_RS09885 WP_275218340.1 2147047..2147409(-) (comEA/comE1) [Actinobacillus equuli subsp. equuli strain 4005]
MKTRSKFGLSLLIGMLSTGTFAAEKVKPTDTEPTPVVQNAQAVTGHNHAEMMTNANLVNINTATAAEIQDKLVGIGAKKA
QAIVEYRTKNGAFSSLEQLTDVSGIGKATLDKNRDRIALQ

Nucleotide


Download         Length: 363 bp        

>NTDB_id=725455 NYR71_RS09885 WP_275218340.1 2147047..2147409(-) (comEA/comE1) [Actinobacillus equuli subsp. equuli strain 4005]
ATGAAAACACGTTCAAAATTTGGTCTAAGTTTATTAATCGGTATGTTATCTACCGGTACGTTTGCAGCTGAAAAAGTAAA
GCCTACCGACACAGAACCTACTCCTGTAGTTCAAAACGCACAAGCAGTCACAGGGCATAACCATGCCGAAATGATGACCA
ATGCAAACTTAGTGAACATTAACACAGCGACCGCCGCTGAAATCCAAGATAAATTGGTTGGTATTGGCGCTAAAAAAGCA
CAAGCGATAGTTGAATATCGTACGAAAAATGGCGCGTTTAGCAGTTTGGAACAACTTACCGATGTATCTGGCATAGGTAA
AGCTACGCTTGATAAAAATCGTGATCGCATTGCATTACAATAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(54-117)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA/comE1 Glaesserella parasuis strain SC1401

64.167

100

0.642