Detailed information    

insolico Bioinformatically predicted

Overview

Name   vicX   Type   Regulator
Locus tag   PY824_RS08390 Genome accession   NZ_CP119172
Coordinates   1608661..1609470 (-) Length   269 a.a.
NCBI ID   WP_115265894.1    Uniprot ID   -
Organism   Streptococcus macedonicus strain SGM CIP105683     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 1603661..1614470
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PY824_RS08380 (PY824_08380) rnc 1606051..1606737 (-) 687 WP_014295006.1 ribonuclease III -
  PY824_RS08385 (PY824_08385) - 1607007..1608263 (+) 1257 WP_115265893.1 ISL3 family transposase -
  PY824_RS08390 (PY824_08390) vicX 1608661..1609470 (-) 810 WP_115265894.1 MBL fold metallo-hydrolase Regulator
  PY824_RS08395 (PY824_08395) vicK 1609471..1610823 (-) 1353 WP_014295009.1 cell wall metabolism sensor histidine kinase VicK Regulator
  PY824_RS08400 (PY824_08400) yycF 1610816..1611526 (-) 711 WP_014295010.1 response regulator YycF -
  PY824_RS08405 (PY824_08405) - 1611831..1612595 (+) 765 WP_014295011.1 amino acid ABC transporter ATP-binding protein -
  PY824_RS08410 (PY824_08410) - 1612606..1613418 (+) 813 WP_014295012.1 transporter substrate-binding domain-containing protein -
  PY824_RS08415 (PY824_08415) - 1613435..1614139 (+) 705 WP_039671116.1 amino acid ABC transporter permease -

Sequence

Protein


Download         Length: 269 a.a.        Molecular weight: 30279.19 Da        Isoelectric Point: 5.3716

>NTDB_id=725445 PY824_RS08390 WP_115265894.1 1608661..1609470(-) (vicX) [Streptococcus macedonicus strain SGM CIP105683]
MSEIAFKYSILASGSTGNSFYVETPQKRFLIDAGLTGKKITSLLAEIDRKPEDLDAIFITHEHSDHIKGVGVLARRYNLD
VYANEKTWQMIDEQNMIGKLDLAQKHIFERGKTLTHGDIDIESFGVSHDAVEPQFYRLMKDNKSFVVLTDTGYVSDRMAG
IIENADGYLIESNHDVEILRSGSYPWSLKQRVLSDKGHLSNEDGAGTMIRTIGNHTKKIYLGHLSKENNIKELARMTMEN
NLIQADFGVGYDMKVFDTSPDEATPLTEL

Nucleotide


Download         Length: 810 bp        

>NTDB_id=725445 PY824_RS08390 WP_115265894.1 1608661..1609470(-) (vicX) [Streptococcus macedonicus strain SGM CIP105683]
ATGTCTGAAATTGCTTTTAAATATAGTATTTTAGCCTCCGGTTCAACTGGAAATTCTTTTTATGTGGAAACACCACAAAA
ACGTTTTTTGATTGATGCGGGTTTGACTGGTAAGAAAATTACCAGTCTTCTTGCTGAAATTGACCGCAAACCAGAAGACT
TAGATGCTATTTTTATTACACACGAACATTCTGATCATATCAAAGGGGTTGGGGTGTTAGCACGTCGTTATAATCTTGAT
GTTTATGCGAATGAAAAAACGTGGCAAATGATTGATGAGCAAAATATGATCGGAAAGCTCGATTTAGCTCAAAAACATAT
TTTTGAACGTGGGAAAACATTGACACATGGTGACATTGATATTGAAAGTTTTGGTGTTAGCCACGATGCCGTTGAGCCAC
AATTTTATCGTTTGATGAAAGATAATAAATCATTTGTTGTCTTAACAGATACAGGTTATGTTAGTGACCGCATGGCAGGA
ATTATTGAAAATGCTGACGGTTATTTGATTGAATCGAATCATGACGTTGAGATTTTACGTTCAGGCTCTTATCCGTGGAG
TTTGAAACAACGTGTCCTATCTGATAAAGGACACTTGTCAAACGAAGATGGTGCTGGGACAATGATTCGAACCATTGGAA
ATCACACGAAGAAAATTTACCTTGGACATTTGAGTAAAGAAAACAATATCAAAGAATTGGCTCGCATGACCATGGAAAAT
AATCTTATTCAAGCTGACTTTGGGGTTGGTTATGACATGAAAGTCTTTGATACCTCACCAGACGAAGCAACACCATTAAC
AGAGTTATAA

Domains

Predicted by InterProScan.

Beta-lactamase superfamily domain (Lactamase_B_2)

(28-217)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vicX Streptococcus mutans UA159

75.836

100

0.758