Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   PY824_RS06560 Genome accession   NZ_CP119172
Coordinates   1219189..1220928 (-) Length   579 a.a.
NCBI ID   WP_014294728.1    Uniprot ID   -
Organism   Streptococcus macedonicus strain SGM CIP105683     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1214189..1225928
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PY824_RS06530 (PY824_06530) - 1214314..1214811 (+) 498 WP_039670890.1 DUF308 domain-containing protein -
  PY824_RS06535 (PY824_06535) queF 1214867..1215358 (-) 492 WP_014294723.1 preQ(1) synthase -
  PY824_RS06540 (PY824_06540) queE 1215371..1216087 (-) 717 WP_099390341.1 7-carboxy-7-deazaguanine synthase QueE -
  PY824_RS06545 (PY824_06545) queD 1216077..1216523 (-) 447 WP_014294725.1 6-carboxytetrahydropterin synthase QueD -
  PY824_RS06550 (PY824_06550) queC 1216516..1217175 (-) 660 WP_014294726.1 7-cyano-7-deazaguanine synthase QueC -
  PY824_RS06555 (PY824_06555) rcrQ 1217420..1219186 (-) 1767 WP_014294727.1 ABC transporter ATP-binding protein Regulator
  PY824_RS06560 (PY824_06560) rcrP 1219189..1220928 (-) 1740 WP_014294728.1 ABC transporter ATP-binding protein Regulator
  PY824_RS06565 (PY824_06565) - 1221006..1222877 (-) 1872 WP_039670891.1 ABC-F family ATP-binding cassette domain-containing protein -
  PY824_RS06570 (PY824_06570) - 1222874..1224079 (-) 1206 WP_039670892.1 CCA tRNA nucleotidyltransferase -
  PY824_RS06575 (PY824_06575) dapB 1224076..1224843 (-) 768 WP_014294731.1 4-hydroxy-tetrahydrodipicolinate reductase -
  PY824_RS06580 (PY824_06580) - 1224863..1225711 (-) 849 WP_039670893.1 DegV family protein -

Sequence

Protein


Download         Length: 579 a.a.        Molecular weight: 64931.44 Da        Isoelectric Point: 5.8601

>NTDB_id=725437 PY824_RS06560 WP_014294728.1 1219189..1220928(-) (rcrP) [Streptococcus macedonicus strain SGM CIP105683]
MKLVWTYLKKYPKWLILDVLGAFAFVVVNLGLPTALARMIDQGIIVGNKDKVYFWAIVMFIVIVVGAIGSVTLVYAAGKI
TTNMIKDMRNDMYDKLLEYSYHEYKQIGVSSLVTRMTSDTFILMQFAEQSLRRGIVAPLMIIFSVVMILVTSPSLAWIVA
VAIPFLALVVYYVAIRTRPLSEKQQATLDKINQYVRENLTGLRVIRAFAREDFQEERFDSKNEEYKGISSRLFKLTGLTE
PSFVFIIVSMIVAIVWFALDPLSRGDFQIGNLVAFIEYSFHALFSFLLFANLFTMYPRVVVSSERISEVMAMPISITPNE
NGVTETETKGYLEFDKVTFAYPGETENPVLKDISFKAKPGETIAFIGSTGSGKSSLVNLIPRFYDVTFGKILVDGVDVRE
YQLKALRQKIGFVPQKALLFTGTIAENLKYGKPDATIDELQEAADVAQAKEFIESLDEGYQTHLAEGGSNLSGGQKQRLS
IARAIVKKPDIYIFDDSFSALDYKTDAQLRARLKEVTKEATVLIVAQRVGTIMDADQIIVLDKGEIVGHGTHDELMQTNT
IYREIANSQLKNADEMKGE

Nucleotide


Download         Length: 1740 bp        

>NTDB_id=725437 PY824_RS06560 WP_014294728.1 1219189..1220928(-) (rcrP) [Streptococcus macedonicus strain SGM CIP105683]
ATGAAACTAGTTTGGACTTATTTGAAAAAATATCCCAAATGGCTCATTTTGGATGTATTAGGAGCTTTTGCATTTGTCGT
GGTTAACCTTGGGTTGCCAACAGCACTAGCTCGTATGATTGACCAAGGGATAATAGTTGGAAATAAAGATAAGGTTTATT
TCTGGGCAATTGTTATGTTTATCGTGATTGTTGTTGGAGCGATTGGTAGTGTTACTTTAGTTTATGCGGCAGGAAAAATC
ACGACTAATATGATTAAAGACATGCGTAATGACATGTACGATAAATTGCTGGAATACTCATACCATGAATACAAACAAAT
CGGTGTGTCATCACTTGTCACTCGGATGACAAGTGATACATTTATTCTTATGCAATTTGCTGAACAATCTTTGCGCAGGG
GGATTGTGGCACCGCTCATGATTATTTTTAGTGTTGTCATGATTTTGGTAACAAGTCCGTCCTTAGCCTGGATTGTTGCG
GTGGCTATTCCCTTTTTGGCACTTGTGGTTTATTACGTTGCGATACGCACACGTCCTTTGTCTGAAAAACAACAAGCCAC
CCTTGATAAAATTAACCAATATGTTCGTGAAAATTTGACTGGTTTGCGTGTCATTCGCGCCTTTGCTAGAGAAGATTTTC
AAGAAGAACGCTTTGATAGTAAAAACGAAGAGTATAAAGGCATTTCAAGTCGTCTGTTCAAACTAACTGGTTTAACAGAG
CCATCCTTTGTCTTTATCATCGTCTCAATGATTGTTGCTATTGTTTGGTTTGCCTTAGATCCGCTCTCAAGGGGTGATTT
TCAGATTGGTAATCTGGTTGCTTTTATTGAATATAGCTTCCATGCGCTCTTTTCATTCTTACTTTTTGCCAATCTCTTTA
CCATGTATCCTCGTGTTGTTGTCTCAAGCGAGCGTATTTCAGAAGTTATGGCAATGCCAATTTCAATCACACCTAACGAA
AATGGTGTAACTGAGACTGAAACAAAAGGTTATTTGGAATTTGACAAGGTGACCTTTGCTTACCCTGGTGAGACAGAAAA
TCCAGTCCTAAAAGATATTTCCTTTAAAGCCAAACCTGGTGAAACCATTGCCTTTATTGGTTCAACAGGTTCTGGGAAAT
CTTCTTTGGTCAATCTGATTCCAAGATTTTATGATGTCACATTTGGTAAAATTTTGGTTGACGGTGTTGATGTTAGAGAA
TATCAATTGAAAGCTCTACGTCAGAAGATTGGCTTTGTGCCTCAAAAAGCGCTCTTGTTTACGGGAACCATTGCCGAAAA
TCTAAAATATGGTAAACCGGATGCAACAATTGATGAATTACAAGAAGCAGCAGATGTTGCACAAGCAAAAGAATTTATCG
AAAGCCTTGATGAGGGTTACCAAACACATTTAGCAGAAGGCGGTAGCAATTTATCAGGAGGACAAAAACAACGGTTGTCC
ATTGCGCGTGCGATTGTTAAGAAACCTGATATTTATATTTTTGATGATTCGTTCTCAGCTCTTGATTATAAAACGGATGC
GCAATTACGTGCGCGTTTGAAAGAAGTTACTAAAGAAGCGACTGTTCTTATTGTGGCACAACGTGTGGGAACGATCATGG
ATGCTGACCAAATTATCGTCCTCGATAAAGGTGAAATTGTGGGACATGGCACACATGATGAATTGATGCAAACAAACACG
ATTTATCGTGAAATTGCTAACTCACAATTGAAAAATGCAGACGAGATGAAAGGAGAATAA

Domains

Predicted by InterProScan.

ABC transporter transmembrane region (ABC_membrane)

(19-280)

ABC transporter (ABC_tran)

(350-497)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

39.817

94.128

0.375