Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   PY824_RS06555 Genome accession   NZ_CP119172
Coordinates   1217420..1219186 (-) Length   588 a.a.
NCBI ID   WP_014294727.1    Uniprot ID   -
Organism   Streptococcus macedonicus strain SGM CIP105683     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1212420..1224186
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PY824_RS06525 (PY824_06525) gdhA 1212716..1214068 (-) 1353 WP_039670889.1 NADP-specific glutamate dehydrogenase -
  PY824_RS06530 (PY824_06530) - 1214314..1214811 (+) 498 WP_039670890.1 DUF308 domain-containing protein -
  PY824_RS06535 (PY824_06535) queF 1214867..1215358 (-) 492 WP_014294723.1 preQ(1) synthase -
  PY824_RS06540 (PY824_06540) queE 1215371..1216087 (-) 717 WP_099390341.1 7-carboxy-7-deazaguanine synthase QueE -
  PY824_RS06545 (PY824_06545) queD 1216077..1216523 (-) 447 WP_014294725.1 6-carboxytetrahydropterin synthase QueD -
  PY824_RS06550 (PY824_06550) queC 1216516..1217175 (-) 660 WP_014294726.1 7-cyano-7-deazaguanine synthase QueC -
  PY824_RS06555 (PY824_06555) rcrQ 1217420..1219186 (-) 1767 WP_014294727.1 ABC transporter ATP-binding protein Regulator
  PY824_RS06560 (PY824_06560) rcrP 1219189..1220928 (-) 1740 WP_014294728.1 ABC transporter ATP-binding protein Regulator
  PY824_RS06565 (PY824_06565) - 1221006..1222877 (-) 1872 WP_039670891.1 ABC-F family ATP-binding cassette domain-containing protein -
  PY824_RS06570 (PY824_06570) - 1222874..1224079 (-) 1206 WP_039670892.1 CCA tRNA nucleotidyltransferase -

Sequence

Protein


Download         Length: 588 a.a.        Molecular weight: 66017.36 Da        Isoelectric Point: 5.2319

>NTDB_id=725436 PY824_RS06555 WP_014294727.1 1217420..1219186(-) (rcrQ) [Streptococcus macedonicus strain SGM CIP105683]
MSKRNIFLRLWDYLQHYKGALFLAIFLKIFSSVMSVLEPFVLGLAITELTANLLDMAHGVAGAHINISYIAMILALYFLR
GLGCGLGSYWSNYFMTDAVQKSIYDLRRDLSKKINRIPVSYFDSQQFGNVLGRFTSDVETVSNALQQSFLQIINAFLTIF
LVICMVLYLNWRLALVVILIIPLTYISAQFILKKSQPYFKKQADALGDMNGFVQENLTGFNVIKLFCREEISSEEFREIT
QNLQEVGFKASFISGIMMPVLSAITDMAYLIVAVLGALQVLSGNLTIGNMQAFVQYAWQVSQPVQTITQLASILQSAKSS
LERIFEVLDEPEEVDYVTEHLTHDLTGQVSFEDVSFQYVADKPLIQNFNLDVKPGEMVAIVGPTGAGKTTLINLLMRFYD
VTSGSIKIDGHDIRNLSRQEYRKQFGMVLQDAWLYEASIKENIRFGNLDATDEEVVEAAKAANVDHFIRTLPGGYNMEIN
QESSNISLGQKQLLTIARALLADPKILILDEATSSVDTRLELLIQKAMAKLMEGRTSFVIAHRLSTIQEADKILVLNNGQ
IIEQGNHESLLAAKGFYYDLYNSQFAKS

Nucleotide


Download         Length: 1767 bp        

>NTDB_id=725436 PY824_RS06555 WP_014294727.1 1217420..1219186(-) (rcrQ) [Streptococcus macedonicus strain SGM CIP105683]
ATGTCAAAACGCAACATTTTTCTACGTTTATGGGATTATCTCCAACACTATAAAGGTGCGCTTTTTCTTGCCATTTTCTT
GAAAATTTTCAGTAGTGTCATGAGTGTATTGGAACCTTTTGTTTTAGGGCTTGCCATTACAGAATTGACAGCAAACCTTC
TTGACATGGCGCACGGTGTAGCAGGTGCTCATATCAATATTTCTTATATTGCAATGATTTTAGCCCTTTATTTCTTGCGA
GGTTTGGGCTGTGGGCTAGGAAGCTATTGGTCAAACTATTTCATGACTGACGCTGTGCAAAAAAGTATTTATGATTTACG
CCGAGATTTAAGTAAAAAAATCAATAGAATTCCAGTTTCTTATTTTGACAGTCAACAATTTGGAAATGTCTTGGGACGTT
TTACGTCAGATGTTGAAACAGTTTCAAACGCTTTACAACAAAGTTTCCTTCAAATTATCAACGCCTTCTTAACCATTTTC
TTGGTTATTTGCATGGTGCTTTATCTCAATTGGCGTTTAGCTTTAGTAGTTATTTTAATCATTCCACTCACTTATATCAG
TGCTCAGTTTATTTTGAAAAAATCTCAACCTTATTTCAAGAAACAAGCTGACGCTCTCGGTGATATGAACGGTTTTGTTC
AGGAAAATCTAACTGGTTTTAACGTTATCAAACTTTTTTGTCGTGAAGAAATTTCAAGTGAAGAATTTCGTGAAATCACT
CAAAATTTGCAAGAAGTTGGTTTCAAGGCAAGCTTTATTTCAGGAATTATGATGCCAGTTCTTAGTGCAATTACTGATAT
GGCTTACCTTATTGTGGCAGTCTTGGGAGCTTTGCAAGTTCTTTCTGGGAACTTGACGATTGGTAATATGCAAGCTTTCG
TTCAATACGCTTGGCAAGTCAGTCAACCCGTTCAAACCATTACACAGTTGGCAAGTATTCTTCAAAGTGCCAAGTCATCA
CTTGAGCGTATCTTTGAAGTTCTAGATGAGCCAGAAGAAGTTGATTATGTAACAGAGCATTTGACACATGATTTAACAGG
TCAAGTTAGCTTTGAAGATGTTTCCTTCCAATACGTGGCAGACAAACCATTGATTCAAAATTTCAATCTTGATGTCAAAC
CAGGGGAAATGGTGGCGATTGTTGGTCCAACTGGGGCTGGTAAGACAACGCTGATTAATCTTTTAATGCGATTCTACGAC
GTTACCTCTGGTTCGATTAAAATTGATGGCCATGATATTCGCAACTTGTCACGTCAAGAATATCGCAAACAATTTGGAAT
GGTCTTGCAAGATGCGTGGCTCTACGAGGCAAGTATCAAGGAAAATATCCGTTTTGGGAACTTGGATGCGACAGATGAAG
AGGTTGTTGAAGCTGCTAAAGCTGCTAATGTTGACCACTTTATTCGCACGCTACCTGGTGGTTACAATATGGAAATAAAC
CAAGAATCAAGCAACATATCACTTGGTCAAAAACAATTGTTAACCATTGCGCGTGCCTTACTTGCTGACCCTAAAATCCT
GATTTTGGACGAAGCAACGTCATCTGTTGACACACGTTTGGAATTATTGATTCAAAAAGCTATGGCTAAATTAATGGAAG
GGCGTACAAGCTTTGTCATTGCTCACCGCCTATCAACCATTCAAGAGGCTGATAAGATTTTGGTGCTTAATAATGGTCAA
ATCATTGAACAGGGCAATCATGAAAGTTTATTAGCTGCGAAAGGTTTCTATTATGACCTTTACAATAGCCAGTTTGCCAA
AAGCTAA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(366-514)

ABC transporter transmembrane region (ABC_membrane)

(21-304)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

43.633

100

0.437