Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   PY824_RS06500 Genome accession   NZ_CP119172
Coordinates   1207327..1209099 (-) Length   590 a.a.
NCBI ID   WP_014294716.1    Uniprot ID   -
Organism   Streptococcus macedonicus strain SGM CIP105683     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1202327..1214099
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PY824_RS06470 (PY824_06470) - 1202694..1203320 (-) 627 WP_014294711.1 ABC transporter permease -
  PY824_RS06475 (PY824_06475) - 1203313..1204086 (-) 774 WP_039670884.1 ABC transporter ATP-binding protein -
  PY824_RS06480 (PY824_06480) - 1204099..1205019 (-) 921 WP_039670885.1 glycine betaine ABC transporter substrate-binding protein -
  PY824_RS06485 (PY824_06485) - 1205009..1205644 (-) 636 WP_039670886.1 ABC transporter permease -
  PY824_RS06490 (PY824_06490) - 1205634..1206086 (-) 453 WP_039670887.1 MarR family winged helix-turn-helix transcriptional regulator -
  PY824_RS06495 (PY824_06495) - 1206076..1207061 (-) 986 Protein_1213 zinc-binding dehydrogenase -
  PY824_RS06500 (PY824_06500) rcrQ 1207327..1209099 (-) 1773 WP_014294716.1 ABC transporter ATP-binding protein Regulator
  PY824_RS06505 (PY824_06505) rcrP 1209089..1210903 (-) 1815 WP_014294717.1 ABC transporter ATP-binding protein Regulator
  PY824_RS06510 (PY824_06510) rcrR 1210907..1211347 (-) 441 WP_014294718.1 MarR family winged helix-turn-helix transcriptional regulator Regulator
  PY824_RS06515 (PY824_06515) - 1211523..1211933 (-) 411 WP_014294719.1 peptide deformylase -
  PY824_RS06520 (PY824_06520) - 1211930..1212439 (-) 510 WP_039670888.1 GNAT family N-acetyltransferase -
  PY824_RS06525 (PY824_06525) gdhA 1212716..1214068 (-) 1353 WP_039670889.1 NADP-specific glutamate dehydrogenase -

Sequence

Protein


Download         Length: 590 a.a.        Molecular weight: 65316.51 Da        Isoelectric Point: 5.3523

>NTDB_id=725433 PY824_RS06500 WP_014294716.1 1207327..1209099(-) (rcrQ) [Streptococcus macedonicus strain SGM CIP105683]
MENKKKTSFYGRMKPYIRGLQLPFLLAVIGAIVSATITVIGPDKLKEITNIITKGLTPTATGMIPGIDLDKVGKIALTLA
ILYVISAVVGYIQSFTVATIVQRFSQRLRKAIQTKINKVPLSYFDSHSQGDTLSRVTNDVDLLGQSLNQSLGTLVTSTML
LIGSIFMMFHSNVSMALTAIGSVLIGFVLVMVIMGSSQPLFKRQQNNLAAINGYVEEIYSGHNVVTSYNAVGETSETFKK
LNTNLYKSMWQSQFLSGIMMPLMIFVGNFGYVMVCVVGAIKVINGDITMGDVVAFMTYVRIFSQPLSQIAQAFTQMQSAT
AAMSRVFEFLEEDEMEDESDKERQLSDVNGEVTFDNVFFGYSKDKTIIHDFSAVAKPGQKVAIVGPTGAGKTTIVNLLMR
FYEIDKGQITIDSVDTRLMTREEVHDQFSMVLQDTWLFEGTIKENLIYNQENITDEQVIAAAKAVGVHHFIMTLPKGYDT
YLDDSVTLSIGQKQLLTIARALLKDSPLLILDEATSSVDTRTEELIQKAMDKLMEGRTSFVIAHRLSTIRNADLILVMKD
GNIIEQGNHDDLMQQGGFYADLYNSQFEAA

Nucleotide


Download         Length: 1773 bp        

>NTDB_id=725433 PY824_RS06500 WP_014294716.1 1207327..1209099(-) (rcrQ) [Streptococcus macedonicus strain SGM CIP105683]
ATGGAAAATAAGAAAAAAACATCTTTCTATGGCAGAATGAAGCCCTATATTAGAGGTCTCCAGCTTCCATTTCTTCTTGC
AGTGATTGGAGCAATTGTTTCTGCGACGATTACGGTTATTGGACCTGATAAATTAAAAGAAATCACCAATATAATCACCA
AAGGTTTGACACCAACGGCGACTGGTATGATTCCAGGAATCGACTTGGATAAAGTTGGTAAAATTGCATTAACTTTGGCA
ATTTTATACGTTATTTCAGCAGTAGTTGGTTATATTCAAAGCTTTACTGTAGCGACTATCGTTCAACGTTTTTCACAACG
TTTACGTAAAGCTATTCAGACCAAAATTAACAAGGTTCCATTGAGTTACTTTGATAGTCATTCACAAGGAGATACCCTTT
CTCGTGTGACAAATGACGTTGACTTGCTTGGTCAATCGCTTAACCAAAGTTTGGGAACTTTAGTGACATCAACCATGTTA
TTGATTGGTTCAATTTTCATGATGTTCCATTCAAATGTCAGCATGGCTTTAACAGCGATTGGGTCTGTTCTGATTGGTTT
TGTTTTGGTTATGGTTATCATGGGCTCATCACAACCATTGTTCAAACGCCAACAAAATAACTTGGCTGCGATTAACGGTT
ATGTTGAAGAAATTTACTCTGGTCATAATGTGGTAACAAGTTATAACGCTGTTGGTGAAACAAGCGAAACCTTTAAAAAA
TTAAACACCAATCTTTATAAATCAATGTGGCAATCACAGTTCTTGTCAGGTATTATGATGCCGCTTATGATTTTCGTTGG
GAACTTTGGTTATGTTATGGTCTGTGTGGTTGGTGCTATTAAAGTTATCAATGGTGATATTACCATGGGTGATGTGGTTG
CCTTTATGACTTATGTTCGTATCTTCTCACAACCATTGTCACAAATTGCGCAAGCTTTCACACAAATGCAATCAGCAACA
GCTGCCATGAGTCGTGTCTTTGAATTCCTTGAAGAAGATGAAATGGAAGACGAGTCTGACAAGGAACGTCAACTTAGTGA
TGTTAATGGTGAAGTTACCTTTGATAATGTTTTCTTTGGTTATTCTAAGGATAAAACAATTATCCATGATTTCTCCGCTG
TAGCGAAACCTGGTCAGAAAGTTGCCATTGTTGGACCAACAGGTGCTGGTAAAACAACCATTGTTAACCTGCTCATGAGA
TTCTATGAAATCGATAAAGGTCAAATCACTATTGATAGTGTGGATACACGTTTGATGACACGTGAAGAAGTGCATGACCA
ATTCTCAATGGTGCTTCAAGATACGTGGTTGTTTGAAGGAACAATCAAAGAAAACTTGATTTACAATCAAGAAAATATTA
CAGATGAACAAGTTATTGCAGCGGCTAAGGCTGTTGGTGTTCATCACTTTATCATGACACTTCCAAAAGGTTATGACACT
TATCTTGATGATTCTGTAACGCTTTCAATTGGTCAAAAACAACTCTTGACGATTGCGCGTGCTCTTTTGAAAGATTCACC
GCTCCTTATTTTGGATGAAGCAACGTCATCAGTTGATACACGTACTGAAGAATTGATTCAAAAAGCCATGGATAAATTGA
TGGAAGGTCGTACATCATTTGTTATCGCTCACCGTTTGTCAACGATTAGAAACGCTGACCTTATCCTTGTGATGAAAGAT
GGTAACATCATCGAACAAGGCAATCACGATGATTTGATGCAACAAGGTGGCTTCTATGCTGACCTTTACAATTCACAATT
TGAAGCAGCTTAA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(370-516)

ABC transporter transmembrane region (ABC_membrane)

(25-306)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

73.595

99.492

0.732