Detailed information    

insolico Bioinformatically predicted

Overview

Name   HI0659   Type   Machinery gene
Locus tag   NYR69_RS11025 Genome accession   NZ_CP103815
Coordinates   2350503..2350793 (+) Length   96 a.a.
NCBI ID   WP_039198813.1    Uniprot ID   -
Organism   Actinobacillus equuli subsp. haemolyticus strain 4038     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2345503..2355793
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NYR69_RS11005 (NYR69_11010) rsmI 2346658..2347512 (+) 855 WP_039198806.1 16S rRNA (cytidine(1402)-2'-O)-methyltransferase -
  NYR69_RS11010 (NYR69_11015) - 2347556..2348125 (-) 570 WP_039198809.1 elongation factor P hydroxylase -
  NYR69_RS11015 (NYR69_11020) - 2348185..2349933 (-) 1749 WP_279438543.1 protein-disulfide reductase DsbD -
  NYR69_RS11020 (NYR69_11025) - 2350151..2350522 (+) 372 WP_005621659.1 type II toxin-antitoxin system RelE/ParE family toxin -
  NYR69_RS11025 (NYR69_11030) HI0659 2350503..2350793 (+) 291 WP_039198813.1 helix-turn-helix transcriptional regulator Machinery gene
  NYR69_RS11030 (NYR69_11035) - 2350861..2351823 (-) 963 WP_039198815.1 calcium/sodium antiporter -
  NYR69_RS11035 (NYR69_11040) - 2351896..2352393 (+) 498 WP_279438544.1 YbhB/YbcL family Raf kinase inhibitor-like protein -
  NYR69_RS11040 (NYR69_11045) artP 2352618..2353352 (+) 735 WP_279438545.1 arginine ABC transporter ATP-binding protein ArtP -
  NYR69_RS11045 (NYR69_11050) - 2353373..2354092 (+) 720 WP_279438546.1 transporter substrate-binding domain-containing protein -
  NYR69_RS11050 (NYR69_11055) artQ 2354098..2354769 (+) 672 WP_015674486.1 arginine ABC transporter permease ArtQ -
  NYR69_RS11055 (NYR69_11060) artM 2354769..2355452 (+) 684 WP_279438547.1 arginine ABC transporter permease ArtM -

Sequence

Protein


Download         Length: 96 a.a.        Molecular weight: 10821.59 Da        Isoelectric Point: 8.7275

>NTDB_id=725402 NYR69_RS11025 WP_039198813.1 2350503..2350793(+) (HI0659) [Actinobacillus equuli subsp. haemolyticus strain 4038]
MSPIGSSWTSFEREVFNELEMEENHFRVKLILEIIETRQALGISQRKLEKLSGVKQSMIARIEKGSSNPSLGTLLKLLVP
LGKTLQIVSLDETHSK

Nucleotide


Download         Length: 291 bp        

>NTDB_id=725402 NYR69_RS11025 WP_039198813.1 2350503..2350793(+) (HI0659) [Actinobacillus equuli subsp. haemolyticus strain 4038]
ATGAGCCCCATTGGTTCTAGTTGGACATCATTTGAGCGAGAAGTATTTAACGAGTTAGAAATGGAAGAAAACCATTTCCG
CGTTAAATTAATTCTTGAAATCATTGAAACCCGACAAGCACTAGGCATTTCACAGCGTAAATTAGAAAAACTAAGCGGCG
TTAAACAATCTATGATTGCTCGCATTGAAAAGGGAAGTTCCAATCCTTCTCTTGGTACGTTACTGAAGTTACTGGTGCCT
TTGGGGAAAACATTACAAATTGTCTCTTTAGACGAAACTCATTCTAAATAA

Domains

Predicted by InterproScan.

Helix-turn-helix (HTH_3)

(35-86)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  HI0659 Haemophilus influenzae Rd KW20

65.556

93.75

0.615