Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   NYR69_RS04830 Genome accession   NZ_CP103815
Coordinates   1076950..1078329 (+) Length   459 a.a.
NCBI ID   WP_279439098.1    Uniprot ID   -
Organism   Actinobacillus equuli subsp. haemolyticus strain 4038     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1071950..1083329
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NYR69_RS04800 (NYR69_04805) yacG 1072236..1072424 (-) 189 WP_115589824.1 DNA gyrase inhibitor YacG -
  NYR69_RS04805 (NYR69_04810) coaE 1072406..1073044 (-) 639 WP_279439093.1 dephospho-CoA kinase -
  NYR69_RS04810 (NYR69_04815) - 1073066..1073740 (-) 675 WP_279439094.1 prepilin peptidase -
  NYR69_RS04815 (NYR69_04820) pilC 1073740..1074933 (-) 1194 WP_279439095.1 type II secretion system F family protein Machinery gene
  NYR69_RS04820 (NYR69_04825) pilB 1074926..1076311 (-) 1386 WP_279439096.1 GspE/PulE family protein Machinery gene
  NYR69_RS04825 (NYR69_04830) pilA 1076332..1076769 (-) 438 WP_279439097.1 prepilin-type N-terminal cleavage/methylation domain-containing protein Machinery gene
  NYR69_RS04830 (NYR69_04835) radA 1076950..1078329 (+) 1380 WP_279439098.1 DNA repair protein RadA Machinery gene
  NYR69_RS04835 (NYR69_04840) pepB 1078395..1079678 (+) 1284 WP_279439187.1 aminopeptidase PepB -
  NYR69_RS04840 (NYR69_04845) - 1079806..1080741 (+) 936 WP_279439099.1 KpsF/GutQ family sugar-phosphate isomerase -
  NYR69_RS04845 (NYR69_04850) greB 1080751..1081239 (+) 489 WP_005611555.1 transcription elongation factor GreB -
  NYR69_RS04850 (NYR69_04855) ribE 1081329..1081790 (-) 462 WP_005600491.1 6,7-dimethyl-8-ribityllumazine synthase -
  NYR69_RS04855 (NYR69_04860) - 1081901..1083106 (-) 1206 WP_279439100.1 bifunctional 3,4-dihydroxy-2-butanone-4-phosphate synthase/GTP cyclohydrolase II -

Sequence

Protein


Download         Length: 459 a.a.        Molecular weight: 49742.43 Da        Isoelectric Point: 7.9500

>NTDB_id=725388 NYR69_RS04830 WP_279439098.1 1076950..1078329(+) (radA) [Actinobacillus equuli subsp. haemolyticus strain 4038]
MAKAPKTAYVCNDCGAEYSRWMGQCKECKAWNTISEVRLISSKESSKNDRFSGYAGETSSKVQTLSEISLQEVPRFSSGF
NELDRVLGGGVVPGSAILIGGHPGAGKSTLLLQVMCGLSKMLPTLYVTGEESLQQVAMRANRLGLPTDNLKMLSETSVEH
ICNIADQEKPKLMVIDSIQVMHLSDIQSSPGSVAQVRECASFLTRYAKTRQVAIIMVGHVTKDGTLAGPKVLEHAIDASL
LLEGESDSRFRTLRSQKNRFGAVNELGVFAMTEQGLREVKNPSAIFLSRSDELVSGSSVMVLWEGTRPLLVEIQALVDHS
MLANPRRVAVGLDHNRLSLLLAVLHRHGGLQMSDQDVFVNVVGGVKVTETSADLTLILALISSFRNRPLPQDLVIFGEVG
LAGEIRPVPSGQERISEAAKHGFKRAIVPFGNMPKKPIKDMEVIGVKKLSDALDALGNL

Nucleotide


Download         Length: 1380 bp        

>NTDB_id=725388 NYR69_RS04830 WP_279439098.1 1076950..1078329(+) (radA) [Actinobacillus equuli subsp. haemolyticus strain 4038]
ATGGCAAAAGCACCGAAAACGGCTTACGTATGTAATGATTGCGGCGCAGAATATTCTCGCTGGATGGGACAATGCAAAGA
GTGCAAAGCATGGAATACGATTAGTGAAGTTCGCTTAATCTCTAGTAAAGAATCAAGCAAAAATGACCGCTTCAGCGGTT
ATGCCGGAGAAACATCAAGCAAGGTACAAACACTTTCCGAAATCAGCTTACAAGAAGTGCCTCGTTTTAGTAGTGGGTTT
AATGAGCTTGATCGTGTACTCGGCGGTGGCGTGGTTCCCGGTTCTGCTATTCTTATCGGGGGACATCCTGGTGCAGGAAA
ATCGACACTATTACTGCAAGTGATGTGCGGCTTATCAAAAATGCTACCGACACTCTATGTCACCGGTGAAGAATCATTAC
AACAGGTTGCAATGCGTGCTAATCGTTTAGGGCTACCAACTGATAATCTGAAAATGCTTTCGGAAACATCTGTCGAACAT
ATTTGCAATATTGCCGACCAAGAAAAACCTAAATTAATGGTAATTGACTCTATTCAAGTGATGCATTTATCCGATATTCA
ATCCTCGCCGGGTTCTGTTGCTCAAGTACGAGAATGCGCATCATTTCTTACCCGCTATGCCAAAACACGCCAAGTGGCAA
TTATTATGGTCGGTCACGTCACCAAAGACGGTACGCTTGCCGGTCCAAAAGTGTTAGAGCACGCTATTGATGCCTCATTA
TTGCTAGAAGGTGAATCCGACTCACGATTCAGAACGCTGCGAAGCCAAAAAAACCGATTCGGTGCGGTAAATGAACTTGG
CGTGTTTGCTATGACTGAACAAGGTTTACGAGAAGTTAAAAACCCCTCTGCAATTTTTCTAAGCCGTAGTGATGAATTAG
TTTCAGGCAGTTCAGTTATGGTGCTTTGGGAAGGAACTCGCCCGTTATTAGTCGAAATTCAAGCACTCGTTGATCATTCG
ATGCTCGCAAATCCACGCCGTGTGGCGGTCGGTTTAGATCATAATCGCTTATCGCTCTTGCTAGCAGTGCTTCATCGTCA
CGGTGGATTGCAAATGTCTGACCAAGATGTTTTTGTTAACGTTGTCGGCGGCGTAAAAGTTACGGAAACCAGTGCCGATC
TCACTTTAATTTTGGCTCTGATATCAAGTTTTAGAAATCGTCCGTTGCCACAGGACTTAGTGATCTTTGGTGAAGTAGGG
CTTGCCGGTGAAATCCGTCCGGTACCGAGCGGCCAAGAGCGTATTAGCGAAGCGGCAAAACACGGTTTTAAACGTGCGAT
CGTACCGTTTGGTAATATGCCGAAAAAACCGATAAAAGATATGGAAGTGATTGGGGTTAAAAAATTAAGTGATGCACTAG
ATGCGCTCGGTAATTTATAA

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(9-36)

Subunit ChlI of Mg-chelatase (ChlI)

(347-432)

AAA domain (AAA_25)

(82-224)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

48.796

99.564

0.486
  radA Streptococcus mitis NCTC 12261

44.615

99.129

0.442
  radA Streptococcus pneumoniae Rx1

44.396

99.129

0.44
  radA Streptococcus pneumoniae D39

44.396

99.129

0.44
  radA Streptococcus pneumoniae R6

44.396

99.129

0.44
  radA Streptococcus pneumoniae TIGR4

44.396

99.129

0.44
  radA Streptococcus mitis SK321

44.396

99.129

0.44