Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA/comE1   Type   Machinery gene
Locus tag   NYR67_RS09840 Genome accession   NZ_CP103813
Coordinates   2132656..2133018 (-) Length   120 a.a.
NCBI ID   WP_279470834.1    Uniprot ID   -
Organism   Actinobacillus equuli subsp. equuli strain 4130     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2127656..2138018
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NYR67_RS09825 (NYR67_09825) - 2128450..2129070 (+) 621 WP_279470832.1 MerR family transcriptional regulator -
  NYR67_RS09830 (NYR67_09830) gshAB 2129162..2131435 (-) 2274 WP_279470833.1 bifunctional glutamate--cysteine ligase GshA/glutathione synthetase GshB -
  NYR67_RS09835 (NYR67_09835) asd 2131587..2132480 (-) 894 WP_039198612.1 archaetidylserine decarboxylase -
  NYR67_RS09840 (NYR67_09840) comEA/comE1 2132656..2133018 (-) 363 WP_279470834.1 ComEA family DNA-binding protein Machinery gene
  NYR67_RS09845 (NYR67_09845) - 2133347..2134723 (+) 1377 WP_279470835.1 LysM-like peptidoglycan-binding domain-containing protein -
  NYR67_RS09850 (NYR67_09850) - 2134797..2135252 (+) 456 WP_275218342.1 MliC family protein -
  NYR67_RS09855 (NYR67_09855) waaF 2135335..2136372 (+) 1038 WP_279470836.1 lipopolysaccharide heptosyltransferase II -
  NYR67_RS09860 (NYR67_09860) rfaC 2136448..2137407 (+) 960 WP_279440676.1 lipopolysaccharide heptosyltransferase RfaC -
  NYR67_RS09865 (NYR67_09865) rpsL 2137531..2137905 (+) 375 WP_005543325.1 30S ribosomal protein S12 -

Sequence

Protein


Download         Length: 120 a.a.        Molecular weight: 12796.67 Da        Isoelectric Point: 10.0523

>NTDB_id=725347 NYR67_RS09840 WP_279470834.1 2132656..2133018(-) (comEA/comE1) [Actinobacillus equuli subsp. equuli strain 4130]
MKTRSKFGLSLLIGMLSTGTFAAEKVKPTDIEPTPVVQNAQAVTGHNHAEMMTNANLVNINTATAAEIQDKLVGIGAKKA
QAIVEYRTKNGAFSSLEQLTDVSGIGKATLDKNRDRIALQ

Nucleotide


Download         Length: 363 bp        

>NTDB_id=725347 NYR67_RS09840 WP_279470834.1 2132656..2133018(-) (comEA/comE1) [Actinobacillus equuli subsp. equuli strain 4130]
ATGAAAACACGTTCAAAATTTGGTCTAAGTTTATTAATCGGTATGTTATCTACCGGTACGTTTGCAGCTGAAAAAGTAAA
GCCTACCGACATAGAACCTACTCCTGTAGTTCAAAACGCACAAGCAGTCACAGGGCATAACCATGCCGAAATGATGACCA
ATGCAAACTTAGTGAACATTAACACAGCGACCGCCGCTGAAATCCAAGATAAATTGGTTGGTATTGGCGCTAAAAAAGCA
CAAGCGATAGTTGAATATCGTACGAAAAACGGCGCGTTTAGCAGTTTGGAACAACTTACCGATGTATCTGGCATAGGTAA
AGCTACGCTTGATAAAAATCGTGATCGCATTGCATTACAATAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(54-117)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA/comE1 Glaesserella parasuis strain SC1401

63.333

100

0.633