Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA/comE1   Type   Machinery gene
Locus tag   NYR65_RS10485 Genome accession   NZ_CP103811
Coordinates   2230175..2230537 (-) Length   120 a.a.
NCBI ID   WP_039198614.1    Uniprot ID   -
Organism   Actinobacillus equuli subsp. equuli strain CCUG2041     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2225175..2235537
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NYR65_RS10470 (NYR65_10470) - 2225969..2226589 (+) 621 WP_039198607.1 MerR family transcriptional regulator -
  NYR65_RS10475 (NYR65_10475) gshAB 2226681..2228954 (-) 2274 WP_039198610.1 bifunctional glutamate--cysteine ligase GshA/glutathione synthetase GshB -
  NYR65_RS10480 (NYR65_10480) asd 2229106..2229999 (-) 894 WP_039198612.1 archaetidylserine decarboxylase -
  NYR65_RS10485 (NYR65_10485) comEA/comE1 2230175..2230537 (-) 363 WP_039198614.1 helix-hairpin-helix domain-containing protein Machinery gene
  NYR65_RS10490 (NYR65_10490) - 2230866..2232242 (+) 1377 WP_039198615.1 LysM-like peptidoglycan-binding domain-containing protein -
  NYR65_RS10495 (NYR65_10495) - 2232316..2232771 (+) 456 WP_231554675.1 MliC family protein -
  NYR65_RS10500 (NYR65_10500) waaF 2232854..2233891 (+) 1038 WP_039198617.1 lipopolysaccharide heptosyltransferase II -
  NYR65_RS10505 (NYR65_10505) rfaC 2233967..2234926 (+) 960 WP_039199094.1 lipopolysaccharide heptosyltransferase RfaC -
  NYR65_RS10510 (NYR65_10510) rpsL 2235050..2235424 (+) 375 WP_005543325.1 30S ribosomal protein S12 -

Sequence

Protein


Download         Length: 120 a.a.        Molecular weight: 12814.65 Da        Isoelectric Point: 10.0523

>NTDB_id=725295 NYR65_RS10485 WP_039198614.1 2230175..2230537(-) (comEA/comE1) [Actinobacillus equuli subsp. equuli strain CCUG2041]
MKTRSKFGLSLLIGMLSTGTFAAEKVKPTDTEPTPVVQNAQAVTGHNHAEMMTNANLVNINTATAAEIQDKLVGIGTKKA
QAIVEYRTKNGAFSSLEQLTDVSGIGKATLDKNRDRIALQ

Nucleotide


Download         Length: 363 bp        

>NTDB_id=725295 NYR65_RS10485 WP_039198614.1 2230175..2230537(-) (comEA/comE1) [Actinobacillus equuli subsp. equuli strain CCUG2041]
ATGAAAACACGTTCAAAATTTGGTCTAAGTTTATTAATCGGTATGTTATCTACCGGTACGTTTGCAGCTGAAAAAGTAAA
GCCTACCGACACAGAACCTACTCCTGTAGTTCAAAACGCACAAGCAGTCACAGGGCATAACCATGCCGAAATGATGACCA
ATGCAAACTTAGTGAACATTAACACAGCGACCGCCGCTGAAATCCAAGATAAATTGGTTGGTATTGGCACTAAAAAAGCA
CAAGCGATAGTTGAATATCGTACGAAAAACGGCGCGTTTAGCAGTTTGGAACAACTTACCGATGTATCTGGCATAGGTAA
AGCTACGCTTGATAAAAATCGTGATCGCATTGCATTACAATAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(54-117)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA/comE1 Glaesserella parasuis strain SC1401

63.333

100

0.633