Detailed information    

insolico Bioinformatically predicted

Overview

Name   HI0659   Type   Machinery gene
Locus tag   NYR62_RS06935 Genome accession   NZ_CP103809
Coordinates   1532181..1532474 (-) Length   97 a.a.
NCBI ID   WP_279456934.1    Uniprot ID   -
Organism   Actinobacillus genomosp. 1 strain CCUG22229     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1527181..1537474
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NYR62_RS06905 (NYR62_06905) artM 1527503..1528186 (-) 684 WP_279475039.1 arginine ABC transporter permease ArtM -
  NYR62_RS06910 (NYR62_06910) artQ 1528186..1528857 (-) 672 WP_005598470.1 arginine ABC transporter permease ArtQ -
  NYR62_RS06915 (NYR62_06915) - 1528863..1529582 (-) 720 WP_279475042.1 transporter substrate-binding domain-containing protein -
  NYR62_RS06920 (NYR62_06920) artP 1529603..1530337 (-) 735 WP_279456931.1 arginine ABC transporter ATP-binding protein ArtP -
  NYR62_RS06925 (NYR62_06925) - 1530572..1531069 (-) 498 WP_279456932.1 YbhB/YbcL family Raf kinase inhibitor-like protein -
  NYR62_RS06930 (NYR62_06930) - 1531142..1532104 (+) 963 WP_279468296.1 calcium/sodium antiporter -
  NYR62_RS06935 (NYR62_06935) HI0659 1532181..1532474 (-) 294 WP_279456934.1 helix-turn-helix domain-containing protein Machinery gene
  NYR62_RS06940 (NYR62_06940) - 1532455..1532826 (-) 372 WP_279456935.1 type II toxin-antitoxin system RelE/ParE family toxin -
  NYR62_RS06945 (NYR62_06945) - 1533028..1534779 (+) 1752 WP_279475045.1 protein-disulfide reductase DsbD -
  NYR62_RS06950 (NYR62_06950) - 1534838..1535407 (+) 570 WP_279475047.1 elongation factor P hydroxylase -
  NYR62_RS06955 (NYR62_06955) rsmI 1535451..1536305 (-) 855 WP_279475049.1 16S rRNA (cytidine(1402)-2'-O)-methyltransferase -

Sequence

Protein


Download         Length: 97 a.a.        Molecular weight: 10940.92 Da        Isoelectric Point: 10.3120

>NTDB_id=725233 NYR62_RS06935 WP_279456934.1 1532181..1532474(-) (HI0659) [Actinobacillus genomosp. 1 strain CCUG22229]
MSPIGSSWTSFEQEIFDELEIAETQFRIRLILEIIETRQQLGISQRKLEKLSGVKQSMIARVEKGSVNPSLATVLKLLVP
LGKTLQIVPLDKPKVPR

Nucleotide


Download         Length: 294 bp        

>NTDB_id=725233 NYR62_RS06935 WP_279456934.1 1532181..1532474(-) (HI0659) [Actinobacillus genomosp. 1 strain CCUG22229]
ATGAGCCCTATTGGTTCTAGTTGGACATCGTTTGAACAAGAAATTTTTGACGAGTTGGAAATAGCCGAAACACAATTTCG
CATACGGCTTATTTTAGAGATTATTGAAACCCGTCAGCAACTGGGGATCTCACAAAGAAAGCTGGAAAAATTAAGCGGTG
TGAAACAATCCATGATTGCGCGAGTAGAAAAAGGTTCGGTTAATCCGTCTTTGGCGACCGTATTGAAATTACTCGTTCCG
TTAGGTAAGACTTTACAAATCGTACCACTGGATAAGCCTAAAGTACCACGTTAA

Domains

Predicted by InterproScan.

Helix-turn-helix (HTH_3)

(35-86)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  HI0659 Haemophilus influenzae Rd KW20

66.667

92.784

0.619