Detailed information    

insolico Bioinformatically predicted

Overview

Name   HI0659   Type   Machinery gene
Locus tag   NYR61_RS07345 Genome accession   NZ_CP103808
Coordinates   1592154..1592447 (-) Length   97 a.a.
NCBI ID   WP_279468297.1    Uniprot ID   -
Organism   Actinobacillus genomosp. 1 strain CCUG22231     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1587154..1597447
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NYR61_RS07315 (NYR61_07315) artM 1587486..1588169 (-) 684 WP_279456929.1 arginine ABC transporter permease ArtM -
  NYR61_RS07320 (NYR61_07320) artQ 1588169..1588840 (-) 672 WP_005598470.1 arginine ABC transporter permease ArtQ -
  NYR61_RS07325 (NYR61_07325) - 1588846..1589565 (-) 720 WP_279468293.1 transporter substrate-binding domain-containing protein -
  NYR61_RS07330 (NYR61_07330) artP 1589586..1590320 (-) 735 WP_279468294.1 arginine ABC transporter ATP-binding protein ArtP -
  NYR61_RS07335 (NYR61_07335) - 1590545..1591042 (-) 498 WP_279468295.1 YbhB/YbcL family Raf kinase inhibitor-like protein -
  NYR61_RS07340 (NYR61_07340) - 1591115..1592077 (+) 963 WP_279468296.1 calcium/sodium antiporter -
  NYR61_RS07345 (NYR61_07345) HI0659 1592154..1592447 (-) 294 WP_279468297.1 helix-turn-helix domain-containing protein Machinery gene
  NYR61_RS07350 (NYR61_07350) - 1592428..1592799 (-) 372 WP_279456935.1 type II toxin-antitoxin system RelE/ParE family toxin -
  NYR61_RS07355 (NYR61_07355) - 1593003..1594751 (+) 1749 WP_279468298.1 protein-disulfide reductase DsbD -
  NYR61_RS07360 (NYR61_07360) - 1594811..1595380 (+) 570 WP_279468299.1 elongation factor P hydroxylase -
  NYR61_RS07365 (NYR61_07365) rsmI 1595424..1596279 (-) 856 Protein_1430 16S rRNA (cytidine(1402)-2'-O)-methyltransferase -

Sequence

Protein


Download         Length: 97 a.a.        Molecular weight: 10956.96 Da        Isoelectric Point: 10.3120

>NTDB_id=725207 NYR61_RS07345 WP_279468297.1 1592154..1592447(-) (HI0659) [Actinobacillus genomosp. 1 strain CCUG22231]
MSPIGSSWTSFEQEIFDELEIAETQFRIRLILEIIETRQQLGISQRKLEKLSGVKQSMIARVEKGSVNPSLATVLKLLVP
LGKTLQIVPLDKLKVPR

Nucleotide


Download         Length: 294 bp        

>NTDB_id=725207 NYR61_RS07345 WP_279468297.1 1592154..1592447(-) (HI0659) [Actinobacillus genomosp. 1 strain CCUG22231]
ATGAGCCCTATTGGTTCTAGTTGGACATCGTTTGAACAAGAAATTTTTGACGAGTTGGAAATAGCCGAAACACAATTTCG
CATACGGCTTATTTTAGAGATTATTGAAACCCGTCAGCAACTGGGGATCTCACAAAGAAAGCTGGAAAAATTAAGCGGCG
TGAAACAATCCATGATTGCGCGAGTAGAAAAAGGTTCGGTTAATCCGTCTTTGGCGACTGTATTGAAATTACTCGTTCCG
TTAGGTAAGACTTTACAAATCGTACCGCTGGATAAGCTTAAAGTACCACGTTAA

Domains

Predicted by InterproScan.

Helix-turn-helix (HTH_3)

(35-86)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  HI0659 Haemophilus influenzae Rd KW20

66.667

92.784

0.619