Detailed information    

insolico Bioinformatically predicted

Overview

Name   HI0659   Type   Machinery gene
Locus tag   NYR60_RS09255 Genome accession   NZ_CP103807
Coordinates   1853158..1853442 (-) Length   94 a.a.
NCBI ID   WP_279445789.1    Uniprot ID   -
Organism   Actinobacillus genomosp. 2 strain CCUG15571     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1848158..1858442
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NYR60_RS09225 (NYR60_09225) artM 1848519..1849202 (-) 684 WP_279466905.1 arginine ABC transporter permease ArtM -
  NYR60_RS09230 (NYR60_09230) artQ 1849202..1849873 (-) 672 WP_279466907.1 arginine ABC transporter permease ArtQ -
  NYR60_RS09235 (NYR60_09235) - 1849879..1850598 (-) 720 WP_279466909.1 transporter substrate-binding domain-containing protein -
  NYR60_RS09240 (NYR60_09240) artP 1850618..1851352 (-) 735 WP_279466911.1 arginine ABC transporter ATP-binding protein ArtP -
  NYR60_RS09245 (NYR60_09245) - 1851560..1852057 (-) 498 WP_279466913.1 YbhB/YbcL family Raf kinase inhibitor-like protein -
  NYR60_RS09250 (NYR60_09250) - 1852131..1853093 (+) 963 WP_279466915.1 calcium/sodium antiporter -
  NYR60_RS09255 (NYR60_09255) HI0659 1853158..1853442 (-) 285 WP_279445789.1 helix-turn-helix transcriptional regulator Machinery gene
  NYR60_RS09260 (NYR60_09260) - 1853423..1853734 (-) 312 WP_279466916.1 type II toxin-antitoxin system RelE/ParE family toxin -
  NYR60_RS09265 (NYR60_09265) - 1853991..1855739 (+) 1749 WP_279466918.1 protein-disulfide reductase DsbD -
  NYR60_RS09270 (NYR60_09270) - 1855798..1856367 (+) 570 WP_279466920.1 elongation factor P hydroxylase -
  NYR60_RS09275 (NYR60_09275) rsmI 1856411..1857265 (-) 855 WP_279466922.1 16S rRNA (cytidine(1402)-2'-O)-methyltransferase -

Sequence

Protein


Download         Length: 94 a.a.        Molecular weight: 10435.21 Da        Isoelectric Point: 10.0168

>NTDB_id=725190 NYR60_RS09255 WP_279445789.1 1853158..1853442(-) (HI0659) [Actinobacillus genomosp. 2 strain CCUG15571]
MSPIGSSWHSFEQQVLNPLDIEEQNFRIKLILEIIETRQALGISQRKLESLSGVKQSMIARVEKGSSNPSLATLLKLLVP
LGKTLQIVPLNADK

Nucleotide


Download         Length: 285 bp        

>NTDB_id=725190 NYR60_RS09255 WP_279445789.1 1853158..1853442(-) (HI0659) [Actinobacillus genomosp. 2 strain CCUG15571]
ATGAGCCCTATTGGTTCTAGTTGGCATTCATTTGAACAACAAGTGTTGAATCCTTTAGACATTGAAGAACAAAATTTCCG
CATAAAACTTATTCTTGAAATTATAGAAACCCGTCAAGCACTCGGTATTTCTCAACGCAAGTTAGAAAGTTTAAGCGGCG
TAAAGCAATCAATGATTGCCCGAGTAGAAAAAGGATCGTCCAATCCCTCTTTGGCAACACTATTAAAATTACTGGTTCCG
CTAGGTAAAACGCTACAAATCGTACCGCTGAATGCAGATAAATAA

Domains

Predicted by InterproScan.

Helix-turn-helix (HTH_3)

(35-86)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  HI0659 Haemophilus influenzae Rd KW20

65.556

95.745

0.628